Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0161
         (419 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.02c |qcr7||ubiquinol-cytochrome-c reductase complex subu...    86   2e-18
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar...    26   2.1  
SPCC1393.08 |||transcription factor, zf-GATA type |Schizosacchar...    26   2.7  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    25   3.6  
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po...    25   6.3  
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc...    25   6.3  
SPAC186.07c |||hydroxyacid dehydrogenase |Schizosaccharomyces po...    24   8.4  
SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|ch...    24   8.4  
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      24   8.4  

>SPCC737.02c |qcr7||ubiquinol-cytochrome-c reductase complex subunit
           6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 137

 Score = 85.8 bits (203), Expect = 2e-18
 Identities = 45/88 (51%), Positives = 58/88 (65%), Gaps = 1/88 (1%)
 Frame = +3

Query: 78  NLSGFNKYGLLRDDC-LHETPDVTEALRRLPSHVVDERNFRIVRAIQLSMQKTILPKEEW 254
           +LSG+ KYGL  DD  L E  D  +AL RLP     +R +RI RA+QLS++  ILPK EW
Sbjct: 29  HLSGYRKYGLRYDDLMLEENDDTQKALSRLPKMESYDRVYRIRRAMQLSIENKILPKSEW 88

Query: 255 TKYEEDSLYLTPIVEQVEKERLEREQWE 338
           TK EED  YL P++ +V  ER ERE ++
Sbjct: 89  TKPEEDYHYLRPVLAEVIAERKEREAFD 116


>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 598

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 10/47 (21%), Positives = 25/47 (53%)
 Frame = +3

Query: 195 RIVRAIQLSMQKTILPKEEWTKYEEDSLYLTPIVEQVEKERLEREQW 335
           R+ + +  S ++  +  ++ + YE D   LT  + ++E E + ++ W
Sbjct: 278 RVKKDLFASDEEDDVSADQLSSYERDKARLTQQIRELEAENVAKKSW 324


>SPCC1393.08 |||transcription factor, zf-GATA type
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = -3

Query: 183 RQQHGMEVCGVLQLHQEFHASNHPV 109
           + +HG  VC    L+   H  N P+
Sbjct: 432 KDRHGQTVCNACGLYARLHGHNRPI 456


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 66  KWAYNLSGFNKYGLLRDD 119
           KW + +  F++YGLL D+
Sbjct: 926 KWIFKVQHFSRYGLLDDE 943


>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1010

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
 Frame = +3

Query: 168 SHVVDERNFRIVRA-IQLSMQKTILPKEEWTKYEEDSLYLTPIVEQVEKERLEREQWEKE 344
           S  +DE N  I     QL+   T++ K E    ++    LT   +++EK    +E+   +
Sbjct: 626 SESIDELNNNIEELKAQLNAINTLIKKAELVADQKQLKSLTKNHQEIEKAIHRKERQRDQ 685

Query: 345 Y*MRHGIVVLFN*NKYS 395
           Y  +     LFN ++ S
Sbjct: 686 YMSQEEDSKLFNRSRVS 702


>SPAC6B12.05c |||chromatin remodeling complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 295

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +3

Query: 243 KEEWTKYEEDSLYLTPIVEQVEKERLEREQWEKE 344
           +E+ T YEED +       QV++E LE E+ E+E
Sbjct: 58  EEDDTNYEED-IIDDEESAQVDEEELEEEEEEEE 90


>SPAC186.07c |||hydroxyacid dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 332

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 148 KHSADFHPMLLTRETSVL 201
           KH  D+H  +L ++T+VL
Sbjct: 24  KHEIDYHESILNKKTAVL 41


>SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = +3

Query: 231 TILPKEEWTKYEEDSL-YLTPIVEQVEKERLEREQWEKEY*MRHGIVVLFN 380
           T+  K++ T+   D L Y+  ++ Q +KER  +E+W+ E  +   +  LFN
Sbjct: 117 TLSTKKDETEIAPDCLHYIAELLFQ-KKEREVKEKWKNE--LTEKLKTLFN 164


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 185  EKLPYCTCHTALHAKNN 235
            E +PY  C+TA   KN+
Sbjct: 998  ENIPYALCYTAAQLKNS 1014


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,557,074
Number of Sequences: 5004
Number of extensions: 29647
Number of successful extensions: 124
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)