Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0160
         (773 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222298-1|ABN79658.1|  120|Tribolium castaneum ion transport pe...    24   1.6  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   3.6  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    22   4.7  

>EF222298-1|ABN79658.1|  120|Tribolium castaneum ion transport
           peptide isoform B protein.
          Length = 120

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 14/58 (24%), Positives = 23/58 (39%)
 Frame = -1

Query: 383 IWSKSTFIKKVLAASHASSSDESRFFLAQKLQKMCLSQRRNLNLNVSCAARMLLSPSL 210
           I  K  + K + A   +   D    F   +L  +C S+  +    V C   +LLS  +
Sbjct: 51  IQCKGVYDKSIFAKLDSICEDCYMLFREPQLHNLCRSECFSTKYFVGCVESLLLSEEM 108


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +2

Query: 626 RGSXPRXETHRLVYLIXYTNSXGTAH 703
           R    R E H  VY+    NS G+ H
Sbjct: 86  RAEDYRQEVHAQVYVCLAKNSVGSVH 111


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 548 SYFFKILSIATRHKKTKKNYTN 483
           S  F +L I+  HKK+ KN+ N
Sbjct: 92  SAVFIMLIISFMHKKSFKNFVN 113


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,829
Number of Sequences: 336
Number of extensions: 3507
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20857569
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)