Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0160
         (773 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|...    27   2.3  
SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    27   3.0  
SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr 1|...    26   5.2  
SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|c...    26   6.9  
SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyce...    25   9.1  

>SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +2

Query: 8   LQWSKCASFWFGYLRKYSSNIGRRF 82
           LQ+SK  S++F YLRK + +  R+F
Sbjct: 57  LQYSKDVSYYFRYLRKLNCSRVRKF 81


>SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 268

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 8/69 (11%)
 Frame = +3

Query: 276 KTHFLEFLGKKESRFIRRRCVGCCQNLLDEGRLAPYAQ--------AKAKRVSTQCKICK 431
           K  FL       SR++RR CV C Q      +L+P            +    S  C ICK
Sbjct: 2   KKQFLVRKNSSNSRYLRRDCVICLQKDGLRAQLSPCGHDQFDYSCICRWMDQSLTCPICK 61

Query: 432 KSILRCLFF 458
           + +  C+F+
Sbjct: 62  RHV-DCVFY 69


>SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -2

Query: 349 WQHPTHRLRMNRDSFLPKNSKKCVFLSGVT*T*TFHVLLE 230
           + HPTH   M+R  +   N++K V+ + V  +   + LLE
Sbjct: 297 YHHPTHNYLMDRSRYPDFNARKLVYHAYVEQSAVINDLLE 336


>SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 594

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +3

Query: 399 KRVSTQCKICKKSILRC 449
           K++ST C +C++  LRC
Sbjct: 5   KKISTACDLCRQRKLRC 21


>SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +3

Query: 105 ITDNYYTSDPLTEFMLSRNTD 167
           +++ YYTS  +  F+LS NT+
Sbjct: 226 VSNGYYTSRNIMSFLLSNNTN 246


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,055,316
Number of Sequences: 5004
Number of extensions: 58349
Number of successful extensions: 210
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)