Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0160
(773 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0107 + 12494650-12495270,12507463-12508146,12508325-125084... 30 1.8
12_02_0637 - 21437244-21438080 30 2.3
11_03_0201 + 11578163-11578915 30 2.3
10_07_0032 + 12096290-12097042,12097056-12098066,12110194-12110454 30 2.3
09_02_0555 - 10588685-10592038 29 3.1
01_04_0007 - 15038268-15039062,15039177-15039711,15039887-150399... 29 3.1
12_02_0214 + 15750620-15751273 29 4.1
08_01_0749 + 7063297-7064370 29 4.1
07_03_1512 + 27288779-27289222,27298101-27298399,27298499-272985... 29 4.1
05_01_0464 - 3670397-3670525,3671152-3671244,3671366-3671537,367... 29 4.1
10_01_0300 - 3257584-3258825 29 5.4
07_01_1133 - 10550799-10551137,10552195-10552254,10555693-105574... 29 5.4
07_01_1086 - 9930311-9931993 29 5.4
11_01_0792 + 6679002-6679603,6738490-6738520,6738532-6739644 28 7.2
10_02_0198 - 6611775-6612611 28 7.2
05_03_0216 + 10370531-10371922,10378656-10378808 28 7.2
08_02_0167 - 13564466-13566227,13566361-13566644,13566684-135675... 28 9.5
>08_02_0107 +
12494650-12495270,12507463-12508146,12508325-12508472,
12508493-12508584,12508713-12509426
Length = 752
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +3
Query: 180 ANKKRKGLPKERRRQKHSSST*NVQVQVTPLRKTHFLEFLGKKESRFI 323
A ++K RRR + V ++VTPLR H + GK RF+
Sbjct: 611 AQSRQKSYADNRRRNLEFAVDDFVYLRVTPLRSVHRFQTKGKLAPRFV 658
>12_02_0637 - 21437244-21438080
Length = 278
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/48 (33%), Positives = 21/48 (43%)
Frame = +3
Query: 180 ANKKRKGLPKERRRQKHSSST*NVQVQVTPLRKTHFLEFLGKKESRFI 323
A + K RRR V ++VTPLR H +GK RF+
Sbjct: 110 AQSRHKSYADNRRRDLSFEEGDYVYLRVTPLRGVHRFHTMGKLAPRFV 157
>11_03_0201 + 11578163-11578915
Length = 250
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +3
Query: 180 ANKKRKGLPKERRRQKHSSST*NVQVQVTPLRKTHFLEFLGKKESRFI 323
A ++K RRR+ V ++VTPLR H + GK RF+
Sbjct: 82 AQSRQKSYTDNRRRELTFEVGDYVYLRVTPLRGVHRFQIKGKLAPRFV 129
>10_07_0032 + 12096290-12097042,12097056-12098066,12110194-12110454
Length = 674
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +3
Query: 180 ANKKRKGLPKERRRQKHSSST*NVQVQVTPLRKTHFLEFLGKKESRFI 323
A ++K RRR ++ V V+VTPLR H GK R++
Sbjct: 530 AQSRQKSYADNRRRDLEFAADDFVYVRVTPLRGVHRFRTKGKLAPRYV 577
>09_02_0555 - 10588685-10592038
Length = 1117
Score = 29.5 bits (63), Expect = 3.1
Identities = 18/62 (29%), Positives = 27/62 (43%)
Frame = +3
Query: 138 TEFMLSRNTDLCGTANKKRKGLPKERRRQKHSSST*NVQVQVTPLRKTHFLEFLGKKESR 317
TE + D A ++K RRR + V ++VTPLR H + GK R
Sbjct: 935 TEAKVRTIRDNLKVAQSRQKSYADNRRRDMEFAVDDFVYLRVTPLRGVHRFQTKGKLAPR 994
Query: 318 FI 323
++
Sbjct: 995 YV 996
>01_04_0007 -
15038268-15039062,15039177-15039711,15039887-15039936,
15040376-15040446,15040683-15040731
Length = 499
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +3
Query: 180 ANKKRKGLPKERRRQKHSSST*NVQVQVTPLRKTHFLEFLGKKESRFI 323
A ++K R+R+ + V ++VTPLR+ H + GK RF+
Sbjct: 331 AQSRQKSYADNRQRELTFEAGDYVYLRVTPLRRVHRFQTKGKLAPRFM 378
>12_02_0214 + 15750620-15751273
Length = 217
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = +3
Query: 180 ANKKRKGLPKERRRQKHSSST*NVQVQVTPLRKTHFLEFLGKKESRFI 323
A ++K RRR V ++VTPLR H + GK RF+
Sbjct: 49 AQSRQKSYADNRRRDLAFEEGDYVYLRVTPLRGVHRFQTKGKLAPRFV 96
>08_01_0749 + 7063297-7064370
Length = 357
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = +3
Query: 180 ANKKRKGLPKERRRQKHSSST*NVQVQVTPLRKTHFLEFLGKKESRFI 323
A ++K RRR V ++VTPLR H + GK RF+
Sbjct: 189 AQSRQKSYADNRRRDLAFEEGDYVYLRVTPLRGVHRFQTKGKLAPRFV 236
>07_03_1512 + 27288779-27289222,27298101-27298399,27298499-27298589,
27298701-27298766,27299151-27302660,27311604-27312224
Length = 1676
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = +3
Query: 180 ANKKRKGLPKERRRQKHSSST*NVQVQVTPLRKTHFLEFLGKKESRFI 323
A ++K RRR V ++VTPLR H + GK RF+
Sbjct: 1508 AQSRQKSYADNRRRDLAFEEGDYVYLRVTPLRGVHRFQTKGKLAPRFV 1555
>05_01_0464 -
3670397-3670525,3671152-3671244,3671366-3671537,
3671626-3671702,3671819-3671978,3672104-3672213,
3672321-3672380,3672492-3672629,3672922-3672999,
3673227-3673333,3674506-3674598,3674708-3674723
Length = 410
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +3
Query: 111 DNYYTSDPLTEFMLSRNTDLCGTANKKRKGLP 206
DNY+ S F S LCG+ +K+K LP
Sbjct: 102 DNYFLSSLFLSFQFSVQIALCGSEAQKQKYLP 133
>10_01_0300 - 3257584-3258825
Length = 413
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/48 (33%), Positives = 20/48 (41%)
Frame = +3
Query: 180 ANKKRKGLPKERRRQKHSSST*NVQVQVTPLRKTHFLEFLGKKESRFI 323
A + K RRR V ++VTPLR H GK RF+
Sbjct: 245 AQSRHKSYADNRRRDLSFEEGDYVYLRVTPLRGVHHFHTNGKLAPRFV 292
>07_01_1133 -
10550799-10551137,10552195-10552254,10555693-10557401,
10557534-10557616,10577533-10578074
Length = 910
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/48 (33%), Positives = 21/48 (43%)
Frame = +3
Query: 180 ANKKRKGLPKERRRQKHSSST*NVQVQVTPLRKTHFLEFLGKKESRFI 323
A ++K R R V +QVTPLR H + GK RF+
Sbjct: 664 AQSRQKSYADNRHRDLTFEEGDYVYLQVTPLRGVHRFQTKGKLAPRFV 711
>07_01_1086 - 9930311-9931993
Length = 560
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/48 (33%), Positives = 20/48 (41%)
Frame = +3
Query: 180 ANKKRKGLPKERRRQKHSSST*NVQVQVTPLRKTHFLEFLGKKESRFI 323
A + K RRR V ++VTPLR H GK RF+
Sbjct: 392 AQSRHKSYADNRRRDLSFEEGDYVYLRVTPLRGVHCFHTKGKLAPRFV 439
>11_01_0792 + 6679002-6679603,6738490-6738520,6738532-6739644
Length = 581
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/48 (33%), Positives = 20/48 (41%)
Frame = +3
Query: 180 ANKKRKGLPKERRRQKHSSST*NVQVQVTPLRKTHFLEFLGKKESRFI 323
A + K RRR V ++VTPLR H GK RF+
Sbjct: 413 AQSRHKSYADNRRRDLSFEEGDYVYLRVTPLRGVHRFHTKGKLAPRFV 460
>10_02_0198 - 6611775-6612611
Length = 278
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/48 (33%), Positives = 20/48 (41%)
Frame = +3
Query: 180 ANKKRKGLPKERRRQKHSSST*NVQVQVTPLRKTHFLEFLGKKESRFI 323
A + K RRR V ++VTPLR H GK RF+
Sbjct: 110 AQSRHKSYADNRRRDLSFEEGDYVYLRVTPLRGVHRFHTKGKLAPRFV 157
>05_03_0216 + 10370531-10371922,10378656-10378808
Length = 514
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/48 (33%), Positives = 20/48 (41%)
Frame = +3
Query: 180 ANKKRKGLPKERRRQKHSSST*NVQVQVTPLRKTHFLEFLGKKESRFI 323
A + K RRR V ++VTPLR H GK RF+
Sbjct: 378 AQSRHKSYADNRRRDLSFEEGDYVYLRVTPLRGVHRFHTKGKLAPRFV 425
>08_02_0167 - 13564466-13566227,13566361-13566644,13566684-13567540,
13567684-13567957,13567973-13568218
Length = 1140
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +3
Query: 180 ANKKRKGLPKERRRQKHSSST*NVQVQVTPLRKTHFLEFLGKKESRFI 323
A ++K RRR + V +QVTPL+ H + GK R++
Sbjct: 999 AQSRQKSYADNRRRDLEFAVHDFVYLQVTPLQGVHRFQTKGKLAPRYV 1046
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,158,032
Number of Sequences: 37544
Number of extensions: 356800
Number of successful extensions: 995
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 995
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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