Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0160
         (773 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28710| Best HMM Match : Transposase_11 (HMM E-Value=4.9)            44   1e-04
SB_24312| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.002
SB_1285| Best HMM Match : SET (HMM E-Value=0.011)                      40   0.003
SB_29524| Best HMM Match : No HMM Matches (HMM E-Value=.)              39   0.004
SB_53723| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.009
SB_25778| Best HMM Match : COX17 (HMM E-Value=1.1)                     38   0.009
SB_19874| Best HMM Match : CBM_X (HMM E-Value=2.2)                     37   0.021
SB_3002| Best HMM Match : Pkinase (HMM E-Value=4.1e-17)                29   3.2  
SB_20023| Best HMM Match : 7tm_1 (HMM E-Value=3.4e-25)                 28   9.6  
SB_11956| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.6  

>SB_28710| Best HMM Match : Transposase_11 (HMM E-Value=4.9)
          Length = 302

 Score = 44.4 bits (100), Expect = 1e-04
 Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
 Frame = +3

Query: 3   QIYNGQNV-QVFGLDTSGSIVVTLAEGLLDEGRCMITDNYYTSDPLTEFMLSRNTDLCGT 179
           Q+Y G+N  +   +  +  +V  L  GL   G  + TDNYYTS  L +F+       CGT
Sbjct: 40  QLYIGKNPGERAEVGLAARVVKELCSGLEGMGHHLYTDNYYTSVELYQFLFDNQIYACGT 99

Query: 180 ANKKRKGLPKE 212
               RK   KE
Sbjct: 100 IKGNRKNFAKE 110


>SB_24312| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 787

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 19/54 (35%), Positives = 31/54 (57%)
 Frame = +3

Query: 57  IVVTLAEGLLDEGRCMITDNYYTSDPLTEFMLSRNTDLCGTANKKRKGLPKERR 218
           +V+ L   LL++G  +  DN+YTS  L + +    T   GTA + R+G P+E +
Sbjct: 366 VVMKLLSPLLNQGYHLYCDNFYTSVTLIKDLFLVKTPATGTATENRRGFPEEMK 419


>SB_1285| Best HMM Match : SET (HMM E-Value=0.011)
          Length = 829

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 19/54 (35%), Positives = 31/54 (57%)
 Frame = +3

Query: 57  IVVTLAEGLLDEGRCMITDNYYTSDPLTEFMLSRNTDLCGTANKKRKGLPKERR 218
           +V+ L   LL++G  +  DN+YTS  L + +    T   GTA + R+G P+E +
Sbjct: 366 VVMKLLSPLLNQGYHLYCDNFYTSVTLIKDLFLVKTPATGTAAENRRGFPEEMK 419


>SB_29524| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 421

 Score = 39.1 bits (87), Expect = 0.004
 Identities = 22/65 (33%), Positives = 34/65 (52%)
 Frame = +3

Query: 12  NGQNVQVFGLDTSGSIVVTLAEGLLDEGRCMITDNYYTSDPLTEFMLSRNTDLCGTANKK 191
           N Q V   G D    +V+ +A+  L+  R +  DN++T+  L E +L + T  CGT    
Sbjct: 135 NRQRVHGLGYD----VVMDMAKPFLNSYRHIFCDNFFTTVRLFEHLLDQKTYACGTVRVN 190

Query: 192 RKGLP 206
           R+ LP
Sbjct: 191 RRELP 195


>SB_53723| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 709

 Score = 37.9 bits (84), Expect = 0.009
 Identities = 21/65 (32%), Positives = 34/65 (52%)
 Frame = +3

Query: 12  NGQNVQVFGLDTSGSIVVTLAEGLLDEGRCMITDNYYTSDPLTEFMLSRNTDLCGTANKK 191
           N Q V   G D    +V+ +A+  L+  R +  DN++T+  L + +L + T  CGT    
Sbjct: 284 NRQRVHGLGYD----VVMDMAKPFLNSYRHIFCDNFFTTVRLFDHLLDQKTYACGTVRVN 339

Query: 192 RKGLP 206
           R+ LP
Sbjct: 340 RRELP 344


>SB_25778| Best HMM Match : COX17 (HMM E-Value=1.1)
          Length = 567

 Score = 37.9 bits (84), Expect = 0.009
 Identities = 21/65 (32%), Positives = 34/65 (52%)
 Frame = +3

Query: 12  NGQNVQVFGLDTSGSIVVTLAEGLLDEGRCMITDNYYTSDPLTEFMLSRNTDLCGTANKK 191
           N Q V   G D    +V+ +A+  L+  R +  DN++T+  L + +L + T  CGT    
Sbjct: 284 NRQRVHGLGYD----VVMDMAKPFLNSYRHIFCDNFFTTVRLFDHLLDQKTYACGTVRVN 339

Query: 192 RKGLP 206
           R+ LP
Sbjct: 340 RRELP 344


>SB_19874| Best HMM Match : CBM_X (HMM E-Value=2.2)
          Length = 725

 Score = 36.7 bits (81), Expect = 0.021
 Identities = 21/70 (30%), Positives = 33/70 (47%)
 Frame = +3

Query: 3   QIYNGQNVQVFGLDTSGSIVVTLAEGLLDEGRCMITDNYYTSDPLTEFMLSRNTDLCGTA 182
           Q+Y G+  Q   L     +V  L+  L+ +G  +  DN+++S  L   +L R      T 
Sbjct: 277 QVYTGKPQQGQELGLGRRVVEELSTDLIGKGYHLYFDNFFSSVGLMASLLERRIYATATT 336

Query: 183 NKKRKGLPKE 212
            + RK  PKE
Sbjct: 337 RQNRKEFPKE 346


>SB_3002| Best HMM Match : Pkinase (HMM E-Value=4.1e-17)
          Length = 683

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 33/127 (25%), Positives = 54/127 (42%)
 Frame = +3

Query: 75  EGLLDEGRCMITDNYYTSDPLTEFMLSRNTDLCGTANKKRKGLPKERRRQKHSSST*NVQ 254
           +GLL+E       +   ++P+ E    +  +L     +   G    RRR + S     V+
Sbjct: 76  DGLLNERALETESSQAVAEPINELEGKKPDNLRPECGESSPGY---RRRAESSGG--KVR 130

Query: 255 VQVTPLRKTHFLEFLGKKESRFIRRRCVGCCQNLLDEGRLAPYAQAKAKRVSTQCKICKK 434
            Q    R+T  L   GK+E R  +RR   C     DE     YA   +++     +  +K
Sbjct: 131 TQRGRARRTQSLPTDGKREKREDQRRDFSC----FDEADNLRYATKYSEKNLNVYQ--EK 184

Query: 435 SILRCLF 455
           S+ +CLF
Sbjct: 185 SVDKCLF 191


>SB_20023| Best HMM Match : 7tm_1 (HMM E-Value=3.4e-25)
          Length = 548

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = -3

Query: 477 LVN*KFRKTNNAICFFCKFYIALIPFWLWPVHMEQVDLHQE 355
           ++   F   + A+ + C  ++ALI F  WP ++E +   Q+
Sbjct: 139 IITKSFALISTALIWACSLFMALIQFAWWPKNIESMTEEQK 179


>SB_11956| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 832

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 17/69 (24%), Positives = 30/69 (43%)
 Frame = +3

Query: 6   IYNGQNVQVFGLDTSGSIVVTLAEGLLDEGRCMITDNYYTSDPLTEFMLSRNTDLCGTAN 185
           IY G+       ++  ++V  L   +      +  DN+++S  L E +   N   CGT  
Sbjct: 532 IYTGKVAGNAERNSVDNVVHALTSSVRGSNFFVFMDNWFSSVGLFEALERVNIYACGTLR 591

Query: 186 KKRKGLPKE 212
           + RK  P +
Sbjct: 592 QNRKEFPPQ 600


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,660,196
Number of Sequences: 59808
Number of extensions: 432793
Number of successful extensions: 1160
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1099
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1160
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2107953584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)