Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0160
(773 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC130441-1|AAI30442.1| 585|Homo sapiens piggyBac transposable e... 44 8e-04
AK094816-1|BAC04428.1| 332|Homo sapiens protein ( Homo sapiens ... 44 8e-04
AK057200-1|BAB71379.1| 581|Homo sapiens DR1) mRNA. protein. 44 8e-04
EF382674-1|ABR10027.1| 527|Homo sapiens poly(ADP-ribose) glycoh... 32 2.0
DQ867088-1|ABH85399.1| 976|Homo sapiens poly (ADP-ribose) glyco... 32 2.0
BC050560-1|AAH50560.1| 976|Homo sapiens poly (ADP-ribose) glyco... 32 2.0
AY575849-1|AAT66422.1| 868|Homo sapiens poly (ADP-ribose) glyco... 32 2.0
AY575848-1|AAT66421.1| 894|Homo sapiens poly (ADP-ribose) glyco... 32 2.0
AY258587-1|AAP83314.1| 976|Homo sapiens poly(ADP-ribose) glycoh... 32 2.0
AL731572-3|CAI15135.1| 491|Homo sapiens poly (ADP-ribose) glyco... 32 2.0
AL731572-1|CAI15133.1| 191|Homo sapiens poly (ADP-ribose) glyco... 32 2.0
BC052966-1|AAH52966.1| 976|Homo sapiens PARG protein protein. 32 2.6
BC006137-1|AAH06137.1| 960|Homo sapiens RBM19 protein protein. 31 6.1
BC004289-1|AAH04289.1| 960|Homo sapiens RBM19 protein protein. 31 6.1
AB014582-1|BAA31657.2| 973|Homo sapiens KIAA0682 protein protein. 31 6.1
>BC130441-1|AAI30442.1| 585|Homo sapiens piggyBac transposable
element derived 4 protein.
Length = 585
Score = 43.6 bits (98), Expect = 8e-04
Identities = 22/65 (33%), Positives = 33/65 (50%)
Frame = +3
Query: 48 SGSIVVTLAEGLLDEGRCMITDNYYTSDPLTEFMLSRNTDLCGTANKKRKGLPKERRRQK 227
S IV+TL LL +G C+ DN+ S L + TD GTA RK +P + +++
Sbjct: 310 SSRIVLTLVNDLLGQGYCVFLDNFNISPMLFRELHQNRTDAVGTARLNRKQIPNDLKKRI 369
Query: 228 HSSST 242
+T
Sbjct: 370 AKGTT 374
>AK094816-1|BAC04428.1| 332|Homo sapiens protein ( Homo sapiens
cDNA FLJ37497 fis, clone BRAWH2015853. ).
Length = 332
Score = 43.6 bits (98), Expect = 8e-04
Identities = 22/65 (33%), Positives = 33/65 (50%)
Frame = +3
Query: 48 SGSIVVTLAEGLLDEGRCMITDNYYTSDPLTEFMLSRNTDLCGTANKKRKGLPKERRRQK 227
S IV+TL LL +G C+ DN+ S L + TD GTA RK +P + +++
Sbjct: 57 SSRIVLTLVNDLLGQGYCVFLDNFNISPMLFRELHQNRTDAVGTARLNRKQIPNDLKKRI 116
Query: 228 HSSST 242
+T
Sbjct: 117 AKGTT 121
>AK057200-1|BAB71379.1| 581|Homo sapiens DR1) mRNA. protein.
Length = 581
Score = 43.6 bits (98), Expect = 8e-04
Identities = 22/65 (33%), Positives = 33/65 (50%)
Frame = +3
Query: 48 SGSIVVTLAEGLLDEGRCMITDNYYTSDPLTEFMLSRNTDLCGTANKKRKGLPKERRRQK 227
S IV+TL LL +G C+ DN+ S L + TD GTA RK +P + +++
Sbjct: 310 SSRIVLTLVNDLLGQGYCVFLDNFNISPMLFRELHQNRTDAVGTARLNRKQIPNDLKKRI 369
Query: 228 HSSST 242
+T
Sbjct: 370 AKGTT 374
>EF382674-1|ABR10027.1| 527|Homo sapiens poly(ADP-ribose)
glycohydrolase 60 kDa isoform precursor protein.
Length = 527
Score = 32.3 bits (70), Expect = 2.0
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +1
Query: 298 WARKNLDSSEDDAWDAAKTFLMKVDLLHMHRPKPKGYQRNV-KFAKKAYC 444
W+R + D SE D W T ++ +D LH R + + + KAYC
Sbjct: 352 WSRSHEDGSERDDWQRRCTEIVAIDALHFRRYLDQFVPEKMRRELNKAYC 401
>DQ867088-1|ABH85399.1| 976|Homo sapiens poly (ADP-ribose)
glycohydrolase protein.
Length = 976
Score = 32.3 bits (70), Expect = 2.0
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +1
Query: 298 WARKNLDSSEDDAWDAAKTFLMKVDLLHMHRPKPKGYQRNV-KFAKKAYC 444
W+R + D SE D W T ++ +D LH R + + + KAYC
Sbjct: 801 WSRSHEDGSERDDWQRRCTEIVAIDALHFRRYLDQFVPEKMRRELNKAYC 850
>BC050560-1|AAH50560.1| 976|Homo sapiens poly (ADP-ribose)
glycohydrolase protein.
Length = 976
Score = 32.3 bits (70), Expect = 2.0
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +1
Query: 298 WARKNLDSSEDDAWDAAKTFLMKVDLLHMHRPKPKGYQRNV-KFAKKAYC 444
W+R + D SE D W T ++ +D LH R + + + KAYC
Sbjct: 801 WSRSHEDGSERDDWQRRCTEIVAIDALHFRRYLDQFVPEKMRRELNKAYC 850
>AY575849-1|AAT66422.1| 868|Homo sapiens poly (ADP-ribose)
glycohydrolase protein.
Length = 868
Score = 32.3 bits (70), Expect = 2.0
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +1
Query: 298 WARKNLDSSEDDAWDAAKTFLMKVDLLHMHRPKPKGYQRNV-KFAKKAYC 444
W+R + D SE D W T ++ +D LH R + + + KAYC
Sbjct: 693 WSRSHEDGSERDDWQRRCTEIVAIDALHFRRYLDQFVPEKMRRELNKAYC 742
>AY575848-1|AAT66421.1| 894|Homo sapiens poly (ADP-ribose)
glycohydrolase protein.
Length = 894
Score = 32.3 bits (70), Expect = 2.0
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +1
Query: 298 WARKNLDSSEDDAWDAAKTFLMKVDLLHMHRPKPKGYQRNV-KFAKKAYC 444
W+R + D SE D W T ++ +D LH R + + + KAYC
Sbjct: 719 WSRSHEDGSERDDWQRRCTEIVAIDALHFRRYLDQFVPEKMRRELNKAYC 768
>AY258587-1|AAP83314.1| 976|Homo sapiens poly(ADP-ribose)
glycohydrolase protein.
Length = 976
Score = 32.3 bits (70), Expect = 2.0
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +1
Query: 298 WARKNLDSSEDDAWDAAKTFLMKVDLLHMHRPKPKGYQRNV-KFAKKAYC 444
W+R + D SE D W T ++ +D LH R + + + KAYC
Sbjct: 801 WSRSHEDGSERDDWQRRCTEIVAIDALHFRRYLDQFVPEKMRRELNKAYC 850
>AL731572-3|CAI15135.1| 491|Homo sapiens poly (ADP-ribose)
glycohydrolase protein.
Length = 491
Score = 32.3 bits (70), Expect = 2.0
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +1
Query: 298 WARKNLDSSEDDAWDAAKTFLMKVDLLHMHRPKPKGYQRNV-KFAKKAYC 444
W+R + D SE D W T ++ +D LH R + + + KAYC
Sbjct: 316 WSRSHEDGSERDDWQRRCTEIVAIDALHFRRYLDQFVPEKMRRELNKAYC 365
>AL731572-1|CAI15133.1| 191|Homo sapiens poly (ADP-ribose)
glycohydrolase protein.
Length = 191
Score = 32.3 bits (70), Expect = 2.0
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +1
Query: 298 WARKNLDSSEDDAWDAAKTFLMKVDLLHMHRPKPKGYQRNV-KFAKKAYC 444
W+R + D SE D W T ++ +D LH R + + + KAYC
Sbjct: 16 WSRSHEDGSERDDWQRRCTEIVAIDALHFRRYLDQFVPEKMRRELNKAYC 65
>BC052966-1|AAH52966.1| 976|Homo sapiens PARG protein protein.
Length = 976
Score = 31.9 bits (69), Expect = 2.6
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +1
Query: 298 WARKNLDSSEDDAWDAAKTFLMKVDLLHMHRPKPKGYQRNV-KFAKKAYC 444
W+R + D SE D W T ++ +D LH R + + + KAYC
Sbjct: 801 WSRSHEDGSERDDWQRHCTEIVAIDALHFRRYLDQFVPEKMRRELNKAYC 850
>BC006137-1|AAH06137.1| 960|Homo sapiens RBM19 protein protein.
Length = 960
Score = 30.7 bits (66), Expect = 6.1
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Frame = +3
Query: 3 QIYNGQNVQVFGLDTSGSIVVTLAEG---LLDEGRCMITDNYYTSDPLTEFMLSRN 161
Q YN QVF +T GS+ V +A G L+ E R + DN + D ++ R+
Sbjct: 530 QKYNATKSQVFDHETKGSVAVRVALGETQLVQEVRRFLIDNGVSLDSFSQAAAERS 585
>BC004289-1|AAH04289.1| 960|Homo sapiens RBM19 protein protein.
Length = 960
Score = 30.7 bits (66), Expect = 6.1
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Frame = +3
Query: 3 QIYNGQNVQVFGLDTSGSIVVTLAEG---LLDEGRCMITDNYYTSDPLTEFMLSRN 161
Q YN QVF +T GS+ V +A G L+ E R + DN + D ++ R+
Sbjct: 530 QKYNATKSQVFDHETKGSVAVRVALGETQLVQEVRRFLIDNGVSLDSFSQAAAERS 585
>AB014582-1|BAA31657.2| 973|Homo sapiens KIAA0682 protein protein.
Length = 973
Score = 30.7 bits (66), Expect = 6.1
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Frame = +3
Query: 3 QIYNGQNVQVFGLDTSGSIVVTLAEG---LLDEGRCMITDNYYTSDPLTEFMLSRN 161
Q YN QVF +T GS+ V +A G L+ E R + DN + D ++ R+
Sbjct: 543 QKYNATKSQVFDHETKGSVAVRVALGETQLVQEVRRFLIDNGVSLDSFSQAAAERS 598
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,866,268
Number of Sequences: 237096
Number of extensions: 1895051
Number of successful extensions: 4222
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 4073
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4222
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9367263024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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