Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0160
         (773 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40935-1|AAA81687.1| 1131|Caenorhabditis elegans Hypothetical pr...    29   4.9  
Z68009-2|CAA92004.2|  891|Caenorhabditis elegans Hypothetical pr...    28   8.5  

>U40935-1|AAA81687.1| 1131|Caenorhabditis elegans Hypothetical protein
            F31E3.4 protein.
          Length = 1131

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 17/61 (27%), Positives = 32/61 (52%)
 Frame = +3

Query: 9    YNGQNVQVFGLDTSGSIVVTLAEGLLDEGRCMITDNYYTSDPLTEFMLSRNTDLCGTANK 188
            ++G+ VQ+  +  + S V +  E ++ +    +TD+    D LT+F      DLC T ++
Sbjct: 925  FDGKTVQMRAVGRA-SCVDSTGERIIFDDHVKLTDDVEVVDYLTKFSGIVKADLCPTTSE 983

Query: 189  K 191
            K
Sbjct: 984  K 984


>Z68009-2|CAA92004.2|  891|Caenorhabditis elegans Hypothetical
           protein R09A8.2 protein.
          Length = 891

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 21/79 (26%), Positives = 42/79 (53%)
 Frame = +1

Query: 139 QNLCFLAIQTSVAQPIKREKVYRKREGDKSILAAHETFKFKLRR*ERHIFWSFWARKNLD 318
           QN+  +A + + AQ  +     +++E  +S L  H + +   +R E+     FW ++  +
Sbjct: 708 QNIDVIAFEETKAQLRESHGQMKEKERLRS-LDDHGSKESLSKRMEQERMKQFWQKEKHE 766

Query: 319 SSEDDAWDAAKTFLMKVDL 375
           SS DDA + A +F+  +D+
Sbjct: 767 SSRDDANENA-SFVHSLDV 784


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,945,010
Number of Sequences: 27780
Number of extensions: 330196
Number of successful extensions: 953
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 953
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)