Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0160
         (773 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g38920.1 68415.m04784 SPX (SYG1/Pho81/XPR1) domain-containing...    32   0.37 
At2g24230.1 68415.m02894 leucine-rich repeat transmembrane prote...    31   1.1  
At4g02780.1 68417.m00378 copalyl diphosphate synthase / CPS / en...    29   3.4  
At2g12290.1 68415.m01326 hypothetical protein                          28   6.0  
At5g57190.1 68418.m07144 phosphatidylserine decarboxylase, putat...    28   7.9  
At4g16490.1 68417.m02496 armadillo/beta-catenin repeat family pr...    28   7.9  
At2g17430.1 68415.m02011 seven transmembrane MLO family protein ...    28   7.9  

>At2g38920.1 68415.m04784 SPX (SYG1/Pho81/XPR1) domain-containing
           protein / zinc finger (C3HC4-type RING finger)
           protein-related weak similarity to tripartite motif
           protein TRIM13 [Mus musculus] GI:12407427; contains Pfam
           profile PF03105: SPX domain, weak hit to PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 335

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 15/53 (28%), Positives = 28/53 (52%)
 Frame = +3

Query: 270 LRKTHFLEFLGKKESRFIRRRCVGCCQNLLDEGRLAPYAQAKAKRVSTQCKIC 428
           L K  F+E+   K+ + + ++C  C     D+G++ P A + +   S +CK C
Sbjct: 19  LEKCRFVEY---KKLKKVLKKCKTCNSTKSDDGQIIPSATSSSLSDSCECKAC 68


>At2g24230.1 68415.m02894 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 853

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -1

Query: 398 GFGLCIWSKSTFIKKVLAASHASSSDESRFFLAQKLQKMCLSQRRNLNLN 249
           G GL  W  + F+   L  SH    +   FF+++  ++M LS  +  N +
Sbjct: 2   GLGLGFWGYALFLSLFLKQSHCQEPNTDGFFVSEFYKQMGLSSSQAYNFS 51


>At4g02780.1 68417.m00378 copalyl diphosphate synthase / CPS /
           ent-kaurene synthetase A (GA1) identical to GI:571330
           [PMID: 7994182]; formerly called ent-kaurene synthetase
           A
          Length = 802

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = -1

Query: 383 IWSKSTFIKKVLAASHASSSDESRFFLAQKLQKMCLSQRRNLNLN 249
           +W+KS+ + K +++S   SSD  R F  Q  + +  ++R + + N
Sbjct: 584 VWAKSSVLVKAISSSFGESSDSRRSFSDQFHEYIANARRSDHHFN 628


>At2g12290.1 68415.m01326 hypothetical protein 
          Length = 133

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 258 QVTPLRKTHFLEFLGKKESRFIRRRCVGCCQNLL 359
           Q+TP  ++HF  +   K  RF   +  G C +LL
Sbjct: 93  QLTPFHRSHFHPYKDNKRMRFPSNKEGGLCNSLL 126


>At5g57190.1 68418.m07144 phosphatidylserine decarboxylase, putative
           similar to SP|P53037 Phosphatidylserine decarboxylase
           proenzyme 2 precursor (EC 4.1.1.65) {Saccharomyces
           cerevisiae}; contains Pfam profile PF02666:
           phosphatidylserine decarboxylase
          Length = 615

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = -1

Query: 245 SCAARMLLSPSLFR*TFSLFIGCATEVCIARKHKFCQRVARVV 117
           +C +  LL P+      S+F+ CA E  +  + +F +R+  +V
Sbjct: 124 TCKSFNLLDPTSSNVVGSIFLSCAIEDPVETERRFAKRILSIV 166


>At4g16490.1 68417.m02496 armadillo/beta-catenin repeat family
           protein contains Pfam profile: PF00514
           armadillo/beta-catenin-like repeat
          Length = 268

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = -2

Query: 382 YGASRPSSRRFWQHPTHRLRMNRDSFLPKNSKKCVFLSGV 263
           YG+S PS+ R  +     +R  R +F     + C F+  +
Sbjct: 23  YGSSSPSAARLHRQAGRSMRTVRSNFYQSGDQSCSFVGSI 62


>At2g17430.1 68415.m02011 seven transmembrane MLO family protein /
           MLO-like protein 7 (MLO7) identical to membrane protein
           Mlo7 [Arabidopsis thaliana] gi|14091584|gb|AAK53800;
           similar to MLO protein SWISS-PROT:P93766,
           NCBI_gi:1877221 [Hordeum vulgare][Barley]
          Length = 542

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = -2

Query: 241 VLLECFCLLLSFGKPFLFLLAVPQRSVL 158
           ++L    LLL+FG+P++  + VP+++ L
Sbjct: 86  MILGFISLLLTFGEPYILKICVPRKAAL 113


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,802,004
Number of Sequences: 28952
Number of extensions: 302285
Number of successful extensions: 819
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1726528800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)