Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0157
         (775 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    28   0.095
AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory recept...    21   8.3  
AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory recept...    21   8.3  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 27.9 bits (59), Expect = 0.095
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = -3

Query: 479 IFEVVLYYICI*FLYQSFMF*PKFYYFNYEYILFEGPKRLTYIVCL 342
           I   V + +C  + Y +F+     YYF Y +I+F     L +++C+
Sbjct: 90  IIFTVHFLLCTYYFYYAFIILLCVYYFYYAFIIF--TVHLLFLLCI 133



 Score = 25.0 bits (52), Expect = 0.67
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -3

Query: 467 VLYYICI*FLYQSFMF*PKFYYFNYEYILF 378
           +L+ +C+ +     +F P  YYF   +I+F
Sbjct: 193 LLFLLCLDYFTLHLLFLPCIYYFYSAFIIF 222



 Score = 23.8 bits (49), Expect = 1.6
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = -3

Query: 479 IFEV-VLYYICI*FLYQSFMF*PKFYYFNYEYILFEGPKRLTYIVCL 342
           IF V +L+ +CI +      F    YYF   +I+F     L +++C+
Sbjct: 122 IFTVHLLFLLCIYYFVVPLFFLLCIYYFYCAFIIF--TVHLLFLLCI 166



 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -3

Query: 467 VLYYICI*FLYQSFMF*PKFYYFNYEYILF 378
           +L+ +CI + Y + +     YYF   +I+F
Sbjct: 279 LLFLLCIYYFYCALIILLCIYYFCRAFIIF 308



 Score = 21.8 bits (44), Expect = 6.3
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 407 YYFNYEYILFEGPKRLTYIVCL 342
           YYF Y +ILF     L  +VC+
Sbjct: 239 YYFYYAFILF--TVHLLLLVCI 258


>AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory receptor
           candidate 55 protein.
          Length = 402

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +2

Query: 224 QHKFSKSESTSNIYLTNFGTDIKFPIIKATSDILVPKLH 340
           QH+F K   T   + ++   D K P I     IL  +LH
Sbjct: 200 QHRFGKINRTMRSFFSDNKQDDKIPQISDNLYILC-RLH 237


>AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory receptor
           candidate 11 protein.
          Length = 344

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +2

Query: 224 QHKFSKSESTSNIYLTNFGTDIKFPIIKATSDILVPKLH 340
           QH+F K   T   + ++   D K P I     IL  +LH
Sbjct: 200 QHRFGKINRTMRSFFSDNKQDDKIPQISDNLYILC-RLH 237


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,536
Number of Sequences: 336
Number of extensions: 3644
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20857569
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)