Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0157
         (775 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase |Schizosacch...    27   3.0  
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog...    26   5.2  
SPAC227.07c |pab1||protein phosphatase regulatory subunit Pab1|S...    25   9.1  
SPAC869.02c |||nitric oxide dioxygenase |Schizosaccharomyces pom...    25   9.1  

>SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +1

Query: 427 KLWYKN*IQI*YKTTSNIYLKQLGTKITINKHSLCSTP 540
           K+W  +   I Y+T  N Y++ +  K  IN   L  TP
Sbjct: 273 KVWRVDMTMIAYETNRNFYMEWIHKKRIINTQELLVTP 310


>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 982

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 420 EHKTLVQKLNTNII*NYLKYL 482
           EHK LV K+ TN++ N+ K L
Sbjct: 443 EHKDLVDKVYTNVLNNHCKNL 463


>SPAC227.07c |pab1||protein phosphatase regulatory subunit
           Pab1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +1

Query: 481 YLKQLGTKITINKHSLCSTPCSKHFGIIKY*GRIEIAQIKDTKIKLITEN 630
           YLK L  +  INK   C      HF +      I++ ++ +  +K++ EN
Sbjct: 82  YLKSLEIEEKINKIRWCKRTNRAHFLLSTNDKTIKLWKLYEKNLKVVAEN 131


>SPAC869.02c |||nitric oxide dioxygenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 440 KTKYKYNIKLPQISTSNSLVLK*QLTNTV 526
           K KYK N+KL +  +  S V K Q+ + V
Sbjct: 343 KLKYKENLKLKEFFSEESSVTKEQIVDEV 371


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,823,318
Number of Sequences: 5004
Number of extensions: 55497
Number of successful extensions: 130
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)