Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0157
         (775 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1275 + 25382959-25383765,25383850-25384050,25384693-253848...    29   5.4  

>07_03_1275 +
           25382959-25383765,25383850-25384050,25384693-25384888,
           25385583-25385767
          Length = 462

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -3

Query: 182 LFCIKISNIDRLILFK*YQDLMQSCCDFCFDTVDVVSIILFGYHCN 45
           +FC   S    L+  K  Q   Q  CD C+D +D +  IL  Y+ N
Sbjct: 181 IFCKDCSKGRCLMPMKFRQRDPQRVCDACYDRLDPLQGILINYNSN 226


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,323,145
Number of Sequences: 37544
Number of extensions: 259240
Number of successful extensions: 423
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 423
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)