Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0157
         (775 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40203| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.78 
SB_17613| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_7357| Best HMM Match : SAM_2 (HMM E-Value=3e-12)                    29   5.5  

>SB_40203| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 625

 Score = 31.5 bits (68), Expect = 0.78
 Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 6/50 (12%)
 Frame = -3

Query: 563 IIPKCFEHGVEQRL---CLLIVI---LVPSCLR*IFEVVLYYICI*FLYQ 432
           ++P C ++  E RL   C+L +    LVP+C+  ++E+ L   C+ +LY+
Sbjct: 517 LVPACMQYLYEIRLVLACMLYLYEIWLVPACMLYLYEIWLVLACMLYLYE 566



 Score = 29.9 bits (64), Expect = 2.4
 Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 6/51 (11%)
 Frame = -3

Query: 566 FIIPKCFEHGVEQRL---CLLIVI---LVPSCLR*IFEVVLYYICI*FLYQ 432
           +++P C  +  E RL   C+L +    LVP+C+  ++E+ L   C+ +LY+
Sbjct: 151 WLVPACMLYLYEIRLVPACMLYLYEIRLVPACMLYLYEIRLVLACMQYLYE 201



 Score = 28.3 bits (60), Expect = 7.3
 Identities = 12/38 (31%), Positives = 24/38 (63%)
 Frame = -3

Query: 503 LVPSCLR*IFEVVLYYICI*FLYQSFMF*PKFYYFNYE 390
           LVP+C++ ++E+ L   C+ +LY+ ++  P    + YE
Sbjct: 517 LVPACMQYLYEIRLVLACMLYLYEIWLV-PACMLYLYE 553


>SB_17613| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1004

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 9/57 (15%)
 Frame = +1

Query: 247  IYLKHLPHK--FWYRYKIPNNKSYLRYFSTKATL-------KQTMYVKRLGPSNKMY 390
            +Y +H  H    ++R+  P++  Y R+F    T+        +TMY +   PS+ MY
Sbjct: 930  MYFRHFRHSETMYFRHFRPSDTMYFRHFRHSETMYFRHFRHSETMYFRHFRPSDTMY 986


>SB_7357| Best HMM Match : SAM_2 (HMM E-Value=3e-12)
          Length = 410

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = -2

Query: 528 KTVFVNCYFSTKLFEVDI*GSFILYLYLVFVPKFYV-LTKIL 406
           + VF+   FS KL ++D+  +F+L   L   P FYV +T +L
Sbjct: 355 RLVFLRRKFSRKLAQMDVFATFVLAAILKRGPVFYVSITTVL 396


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,426,059
Number of Sequences: 59808
Number of extensions: 355976
Number of successful extensions: 680
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2107953584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)