Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0157
         (775 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    23   3.2  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          23   4.2  

>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 664 KR*KSDXLTSQDEXALRQHK*LDHQNRFQSR 756
           +R  SD +TSQ +   +Q +  D Q + QSR
Sbjct: 79  QREHSDRVTSQQQQQQQQQQQQDQQQQQQSR 109


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 13/57 (22%), Positives = 24/57 (42%)
 Frame = +3

Query: 327 YQSYTQANNVCQTFRSFKQNVFIVKIVKFWLEHKTLVQKLNTNII*NYLKYLPQTAW 497
           + + T  NN  +  +  K   +      +W +   +++ L T+II      LPQ  W
Sbjct: 238 FDNATIVNNGPEAAKMAKAFTYTYNYSMYWGQGHAILKGLKTSIILMNGTTLPQIMW 294


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,819
Number of Sequences: 438
Number of extensions: 3806
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)