Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0156
(774 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 419 e-118
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 419 e-118
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 419 e-118
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 217 2e-57
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 206 2e-54
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 117 2e-27
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 59 8e-10
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 50 5e-07
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 48 1e-06
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 42 7e-05
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 42 7e-05
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 42 1e-04
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 36 7e-04
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 34 0.026
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 33 0.034
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 30 0.42
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p... 29 0.56
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 29 0.56
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom... 27 3.9
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 26 5.2
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c... 26 6.9
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 26 6.9
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb... 25 9.1
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 419 bits (1033), Expect = e-118
Identities = 196/255 (76%), Positives = 218/255 (85%)
Frame = +1
Query: 10 RXKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 189
+ K HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVLDK
Sbjct: 3 KEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVLDK 62
Query: 190 LKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSXADCAVLIVAAGTGE 369
LKAERERGITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTS ADCAVLI+ GTGE
Sbjct: 63 LKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAVLIIGGGTGE 122
Query: 370 FEAGISKNGQTREHALLAFTLGVKQLIVXVNKMDSTEPPYSEPRFEEIKXEVSSYIKKIG 549
FEAGISK+GQTREHALLA+TLGVKQLIV VNKMD+T +S+ RFEEI E S++IKK+G
Sbjct: 123 FEAGISKDGQTREHALLAYTLGVKQLIVAVNKMDTT--GWSQARFEEIVKETSNFIKKVG 180
Query: 550 YNPSAVAFVPISGWHGDNMLEPSTKMPWFXGWXVERXESKADXKCLIEALDAXLAPARPT 729
+NP V FVP+SG+ GDNM+EP+T MPW+ GW E K L+EA+D+ PARPT
Sbjct: 181 FNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAGVVKGKTLLEAIDSIEPPARPT 240
Query: 730 DKPLRLXLQDVYKIG 774
DKPLRL LQDVYKIG
Sbjct: 241 DKPLRLPLQDVYKIG 255
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 419 bits (1032), Expect = e-118
Identities = 195/255 (76%), Positives = 218/255 (85%)
Frame = +1
Query: 10 RXKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 189
+ K HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVLDK
Sbjct: 3 KEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVLDK 62
Query: 190 LKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSXADCAVLIVAAGTGE 369
LKAERERGITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTS ADCA+LI+ GTGE
Sbjct: 63 LKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGE 122
Query: 370 FEAGISKNGQTREHALLAFTLGVKQLIVXVNKMDSTEPPYSEPRFEEIKXEVSSYIKKIG 549
FEAGISK+GQTREHALLA+TLGVKQLIV VNKMD+T +S+ RFEEI E S++IKK+G
Sbjct: 123 FEAGISKDGQTREHALLAYTLGVKQLIVAVNKMDTT--GWSQARFEEIVKETSNFIKKVG 180
Query: 550 YNPSAVAFVPISGWHGDNMLEPSTKMPWFXGWXVERXESKADXKCLIEALDAXLAPARPT 729
+NP V FVP+SG+ GDNM+EP+T MPW+ GW E K L+EA+D+ PARPT
Sbjct: 181 FNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAGVVKGKTLLEAIDSIEPPARPT 240
Query: 730 DKPLRLXLQDVYKIG 774
DKPLRL LQDVYKIG
Sbjct: 241 DKPLRLPLQDVYKIG 255
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 419 bits (1032), Expect = e-118
Identities = 195/255 (76%), Positives = 218/255 (85%)
Frame = +1
Query: 10 RXKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 189
+ K HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVLDK
Sbjct: 3 KEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVLDK 62
Query: 190 LKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSXADCAVLIVAAGTGE 369
LKAERERGITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTS ADCA+LI+ GTGE
Sbjct: 63 LKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGE 122
Query: 370 FEAGISKNGQTREHALLAFTLGVKQLIVXVNKMDSTEPPYSEPRFEEIKXEVSSYIKKIG 549
FEAGISK+GQTREHALLA+TLGVKQLIV VNKMD+T +S+ RFEEI E S++IKK+G
Sbjct: 123 FEAGISKDGQTREHALLAYTLGVKQLIVAVNKMDTT--GWSQARFEEIVKETSNFIKKVG 180
Query: 550 YNPSAVAFVPISGWHGDNMLEPSTKMPWFXGWXVERXESKADXKCLIEALDAXLAPARPT 729
+NP V FVP+SG+ GDNM+EP+T MPW+ GW E K L+EA+D+ PARPT
Sbjct: 181 FNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAGVVKGKTLLEAIDSIEPPARPT 240
Query: 730 DKPLRLXLQDVYKIG 774
DKPLRL LQDVYKIG
Sbjct: 241 DKPLRLPLQDVYKIG 255
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 217 bits (529), Expect = 2e-57
Identities = 116/254 (45%), Positives = 155/254 (61%), Gaps = 3/254 (1%)
Frame = +1
Query: 16 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 195
K +++VV GHVDSGKST G ++++ G I+ R+++K EA GKGSF YAW+LD +
Sbjct: 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTE 234
Query: 196 AERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSXADCAVLIVAAGTGEFE 375
ER RG+T+D+A FE+ K I DAPGHRDFI MI G S AD AVL+V + FE
Sbjct: 235 EERARGVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFE 294
Query: 376 AGISKNGQTREHALLAFTLGVKQLIVXVNKMDSTEPPYSEPRFEEIKXEVSSY-IKKIGY 552
G +NGQTREHA L LG+ +++V VNK+D +SE RF+EIK VS + IK +G+
Sbjct: 295 RGFLENGQTREHAYLLRALGISEIVVSVNKLDLMS--WSEDRFQEIKNIVSDFLIKMVGF 352
Query: 553 NPSAVAFVPISGWHGDNML--EPSTKMPWFXGWXVERXESKADXKCLIEALDAXLAPARP 726
S V FVPIS G N++ + S W+ G L+ ALD + P +P
Sbjct: 353 KTSNVHFVPISAISGTNLIQKDSSDLYKWYKG------------PTLLSALDQLVPPEKP 400
Query: 727 TDKPLRLXLQDVYK 768
KPLRL + DVY+
Sbjct: 401 YRKPLRLSIDDVYR 414
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 206 bits (504), Expect = 2e-54
Identities = 95/213 (44%), Positives = 143/213 (67%), Gaps = 4/213 (1%)
Frame = +1
Query: 16 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 195
K H+NIV IGHVD+GKST G++++ G +DKRT+EK E+EA+E GK S+ +W LD
Sbjct: 236 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTS 295
Query: 196 AERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSXADCAVLIVAAGTGEFE 375
ERE+G T+++ FET +++DAPGH+ ++ NMI G S AD VL+++A GEFE
Sbjct: 296 EEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFE 355
Query: 376 AGISKNGQTREHALLAFTLGVKQLIVXVNKMDSTEPPYSEPRFEEIKXEVSSYIKKI-GY 552
AG + GQTREHA+LA T G+ L+V +NKMD +SE R++E ++S +++++ GY
Sbjct: 356 AGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGY 415
Query: 553 NPSA-VAFVPISGWHGDNMLE--PSTKMPWFXG 642
N V ++P+S + G N+ + S+ PW+ G
Sbjct: 416 NSKTDVKYMPVSAYTGQNVKDRVDSSVCPWYQG 448
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 117 bits (282), Expect = 2e-27
Identities = 85/257 (33%), Positives = 126/257 (49%), Gaps = 1/257 (0%)
Frame = +1
Query: 4 WARXKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 183
+ R K H+NI IGHVD GK+T T I KC ++G+ SF +
Sbjct: 47 FVRKKPHVNIGTIGHVDHGKTTLTA-AITKC--------------LSDLGQASFMDYSQI 91
Query: 184 DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSXADCAVLIVAAGT 363
DK E+ RGITI A ++ET+ + +D PGH D+IKNMITG + D A+++V+A
Sbjct: 92 DKAPEEKARGITISSAHVEYETANRHYAHVDCPGHADYIKNMITGAATMDGAIIVVSATD 151
Query: 364 GEFEAGISKNGQTREHALLAFTLGVKQLIVXVNKMDSTEPPYSEPRFEEIKXEVSSYIKK 543
G+ QTREH LLA +GVKQ++V +NK+D EP E ++ E+ + +
Sbjct: 152 GQMP-------QTREHLLLARQVGVKQIVVYINKVDMVEP----DMIELVEMEMRELLSE 200
Query: 544 IGYNPSAVAFVPISGWHGDNMLEPSTKMPWFXGWXVERXESKADXKCLIEALDAXLA-PA 720
G++ V S EP + L+EA+D+ + P
Sbjct: 201 YGFDGDNTPIVSGSALCALEGREPEIGL--------------NSITKLMEAVDSYITLPE 246
Query: 721 RPTDKPLRLXLQDVYKI 771
R TD P + ++DV+ I
Sbjct: 247 RKTDVPFLMAIEDVFSI 263
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 58.8 bits (136), Expect = 8e-10
Identities = 47/148 (31%), Positives = 70/148 (47%)
Frame = +1
Query: 28 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 207
N+ +I H+D+GK+T T ++Y G F + G V+D L AER+
Sbjct: 30 NVGIIAHIDAGKTTLTEKMLYYGG---------FTSHFGNVDTGDT----VMDYLPAERQ 76
Query: 208 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSXADCAVLIVAAGTGEFEAGIS 387
RGITI+ A F + +ID PGH DF + + D AV I+ + AG+
Sbjct: 77 RGITINSAAISFTWRNQRINLIDTPGHADFTFEVERSVAVLDGAVAII-----DGSAGV- 130
Query: 388 KNGQTREHALLAFTLGVKQLIVXVNKMD 471
QT+ A G+ + ++ VNKMD
Sbjct: 131 -EAQTKVVWKQATKRGIPK-VIFVNKMD 156
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 49.6 bits (113), Expect = 5e-07
Identities = 48/153 (31%), Positives = 69/153 (45%), Gaps = 19/153 (12%)
Frame = +1
Query: 10 RXKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 189
R K NI + H+DSGK+T T ++Y G I K+ E+ +G +D
Sbjct: 55 RLKQIRNIGISAHIDSGKTTFTERVLYYTGRI---------KDIHEV-RGKDNVGAKMDF 104
Query: 190 LKAERERGITIDIA----LWK---------------FETSKYYVTIIDAPGHRDFIKNMI 312
++ ERE+GITI A W+ FE S Y + IID PGH DF +
Sbjct: 105 MELEREKGITIQSAATHCTWERTVDQIEANEKQKTDFEKS-YNINIIDTPGHIDFTIEVE 163
Query: 313 TGTSXADCAVLIVAAGTGEFEAGISKNGQTREH 411
D AVL++ A +G I+ + Q R +
Sbjct: 164 RALRVLDGAVLVLCAVSGVQSQTITVDRQMRRY 196
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 48.0 bits (109), Expect = 1e-06
Identities = 42/152 (27%), Positives = 69/152 (45%), Gaps = 4/152 (2%)
Frame = +1
Query: 28 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 207
N VI H+D GKST + ++ G I++ + F LDKL+ ER
Sbjct: 60 NWAVIAHIDHGKSTLSDCILKLTGVINEHNF-----------RNQF-----LDKLEVERR 103
Query: 208 RGITIDIA----LWKFETSKYYVTIIDAPGHRDFIKNMITGTSXADCAVLIVAAGTGEFE 375
RGIT+ ++ + Y + +ID PGH DF ++ + + +L+V A G
Sbjct: 104 RGITVKAQTCSMIYYYHGQSYLLNLIDTPGHVDFRAEVMHSLAACEGCILLVDASQG--- 160
Query: 376 AGISKNGQTREHALLAFTLGVKQLIVXVNKMD 471
QT + +AF+ + +I +NK+D
Sbjct: 161 ----IQAQTLSNFYMAFSQNL-VIIPVLNKVD 187
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 42.3 bits (95), Expect = 7e-05
Identities = 35/111 (31%), Positives = 52/111 (46%), Gaps = 3/111 (2%)
Frame = +1
Query: 28 NIVVIGHVDSGKSTTTGHLIYKCGGID--KRTIEKF-EKEAQEMGKGSFKYAWVLDKLKA 198
N+ VI HVD GKST T L+ K G I K +F + A E +G + + L A
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTRADEQERGVTIKSTAI-SLFA 79
Query: 199 ERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSXADCAVLIV 351
E D+ + + + V +ID+PGH DF + D A+++V
Sbjct: 80 EMTDDDMKDMK-EPADGTDFLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 42.3 bits (95), Expect = 7e-05
Identities = 35/111 (31%), Positives = 52/111 (46%), Gaps = 3/111 (2%)
Frame = +1
Query: 28 NIVVIGHVDSGKSTTTGHLIYKCGGID--KRTIEKF-EKEAQEMGKGSFKYAWVLDKLKA 198
N+ VI HVD GKST T L+ K G I K +F + A E +G + + L A
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTRADEQERGVTIKSTAI-SLFA 79
Query: 199 ERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSXADCAVLIV 351
E D+ + + + V +ID+PGH DF + D A+++V
Sbjct: 80 EMTDDDMKDMK-EPADGTDFLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 41.5 bits (93), Expect = 1e-04
Identities = 22/85 (25%), Positives = 39/85 (45%)
Frame = +1
Query: 259 YVTIIDAPGHRDFIKNMITGTSXADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 438
+V+ +D PGH + M+ G + D A+L++A QT EH + +
Sbjct: 109 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMQL 162
Query: 439 KQLIVXVNKMDSTEPPYSEPRFEEI 513
K +I+ NK+D +E ++ I
Sbjct: 163 KHIIILQNKVDLIRESAAEEHYQSI 187
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 35.9 bits (79), Expect(2) = 7e-04
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Frame = +1
Query: 151 GKGSFKYAWVLDKLKAERERGITIDIALWK--FETSKYYVTIIDAPGHRDFIKNMITGTS 324
GK + A+ + + GIT I + F+ ++T +D PGH F G +
Sbjct: 183 GKTTLLDAFRKSTIASTEHGGITQKIGAFTVPFDKGSKFITFLDTPGHMAFEAMRKRGAN 242
Query: 325 XADCAVLIVAAGTG 366
AD VL+VA G
Sbjct: 243 IADIVVLVVAGDDG 256
Score = 22.2 bits (45), Expect(2) = 7e-04
Identities = 7/13 (53%), Positives = 11/13 (84%)
Frame = +1
Query: 31 IVVIGHVDSGKST 69
+ ++GHVD GK+T
Sbjct: 174 VTLMGHVDHGKTT 186
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 33.9 bits (74), Expect = 0.026
Identities = 30/116 (25%), Positives = 48/116 (41%), Gaps = 3/116 (2%)
Frame = +1
Query: 28 NIVVIGHVDSGKSTTTGHLIYKCGGIDKR---TIEKFEKEAQEMGKGSFKYAWVLDKLKA 198
N ++ HVD GK+T L+ G I + T+ + E+ +G + K A
Sbjct: 21 NFTLLAHVDHGKTTLADSLLASNGIISSKLAGTVRFLDFREDEITRG------ITMKSSA 74
Query: 199 ERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSXADCAVLIVAAGTG 366
I K Y + +ID+PGH DF + + + D A ++V A G
Sbjct: 75 ISLFFKVISQNDEKRVEKDYLINLIDSPGHVDFSSEVSSASRLCDGAFVLVDAVEG 130
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 33.5 bits (73), Expect = 0.034
Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 2/107 (1%)
Frame = +1
Query: 37 VIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA--QEMGKGSFKYAWVLDKLKAERER 210
++GHVD+GK+ +L + +++ E Q++G F + K K ++
Sbjct: 489 ILGHVDTGKTKLLDNL-------RRSNVQEGEAGGITQQIGATYFPIESIKQKTKVVNKK 541
Query: 211 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSXADCAVLIV 351
G K + + + IID PGH F GTS + A+L++
Sbjct: 542 G--------KLQYNIPGLLIIDTPGHESFTNLRSRGTSLCNIAILVI 580
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 29.9 bits (64), Expect = 0.42
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Frame = +1
Query: 184 DKLKAER-ERGITIDIALWKFETSKYYV--TIIDAPGHRDFIKN 306
+K++A+ E+ + I+I + E +++ T+ID PG DFI N
Sbjct: 60 EKVRAKHAEKTVEIEITKAELEEKNFHLRLTVIDTPGFGDFINN 103
>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 704
Score = 29.5 bits (63), Expect = 0.56
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -2
Query: 221 IVIPRSRSAFSLSNTQAYLKDPLPISWASFSNFSMVRLSIPPH 93
I IP+ A S+ N++ + +D LP + S V+L +P H
Sbjct: 171 IPIPKKNPARSVCNSKLFNEDTLPAEFEEVSISPPVKLELPTH 213
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 29.5 bits (63), Expect = 0.56
Identities = 28/113 (24%), Positives = 47/113 (41%), Gaps = 5/113 (4%)
Frame = +1
Query: 28 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 207
+ +V GH+ GKS L+Y + + + S +Y D ERE
Sbjct: 142 SFIVAGHLHHGKSALLDLLVYYT-----------HPDTKPPKRRSLRYT---DTHYLERE 187
Query: 208 RGITID-----IALWKFETSKYYVTIIDAPGHRDFIKNMITGTSXADCAVLIV 351
R ++I +A+ + + ID PGH DF+ + + +D VL+V
Sbjct: 188 RVMSIKSTPLTLAVSDMKGKTFAFQCIDTPGHVDFVDEVAAPMAISDGVVLVV 240
>SPCC63.03 |||DNAJ domain protein, DNAJC11
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 642
Score = 26.6 bits (56), Expect = 3.9
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -2
Query: 245 SNFQRAISIVIPRSRSAFSLSNTQAYLKDPLPISWASFSNFSMV 114
S F IS+ +P FSL+ ++ K LPI W S + S V
Sbjct: 403 STFGVNISVGVPTGSITFSLNWSRLGQKISLPIMWCSVFDRSAV 446
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 26.2 bits (55), Expect = 5.2
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +2
Query: 584 LDGTETTCWSLQPKCLGSXDGXWSVXKAKLTENASLK 694
LD + W++QP C + DG A L++NA LK
Sbjct: 149 LDKLKDRLWNVQPTCALTGDGLLE-GLAWLSQNAKLK 184
>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 367
Score = 25.8 bits (54), Expect = 6.9
Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Frame = +2
Query: 488 TVSPDLRKSRXKYPHTSRRLATTHLL---SLSCPFLDGTETTCWSLQPKCLGSXDGXWSV 658
+ +PD+ ++PHT +R +T L LSC + +E + P G D + +
Sbjct: 145 STNPDVLYMSSQHPHTQQRYSTLKRLMVRCLSCEYSTLSEASDSMSNPLFFGDQDNGYVI 204
Query: 659 XKA 667
++
Sbjct: 205 SQS 207
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 25.8 bits (54), Expect = 6.9
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -3
Query: 211 HAHAQPLVCPIPKHI*RILYPFPGPPSRTSRWY 113
H+H PL P+P +L P P P S WY
Sbjct: 135 HSHHPPLHNPLPVSCQPVLRP-PPVPQVPSHWY 166
>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 662
Score = 25.4 bits (53), Expect = 9.1
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = -3
Query: 190 VCPIPKHI*RILYPFPGPPSRTSRWYVCQYHHICRSSDQWWWT 62
V +PK I I++ F P S S C+Y S D W T
Sbjct: 31 VLNLPKEILIIIFSFLDPRSLLSAQCTCKYWKKLLSDDLSWRT 73
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.135 0.410
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,958,782
Number of Sequences: 5004
Number of extensions: 59653
Number of successful extensions: 206
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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