Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0156
(774 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 171 5e-43
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 126 2e-29
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09) 110 1e-24
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018) 92 4e-19
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) 52 4e-07
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26) 41 0.001
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 37 0.021
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.028
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.028
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34) 35 0.064
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.11
SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12) 34 0.11
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07) 34 0.15
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10) 30 1.8
SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_19088| Best HMM Match : PSGP (HMM E-Value=2.5) 29 5.5
SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.6
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 171 bits (416), Expect = 5e-43
Identities = 72/157 (45%), Positives = 112/157 (71%)
Frame = +1
Query: 88 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVT 267
Y G +DKRT+EK+E+EA+E + ++ +W LD + ER++G T+++ F+T + T
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGNTVEVGRAAFDTDTKHFT 225
Query: 268 IIDAPGHRDFIKNMITGTSXADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQL 447
++DAPGH+ F+ NMI+G + AD VL+++A GEFE G + GQTREHA+LA T GVK L
Sbjct: 226 LLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFERGGQTREHAMLAKTAGVKHL 285
Query: 448 IVXVNKMDSTEPPYSEPRFEEIKXEVSSYIKKIGYNP 558
++ VNKMD ++E R+EEIK +++ ++KK+G+NP
Sbjct: 286 VILVNKMDDPTVKWNEERYEEIKVKLTPFLKKVGFNP 322
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 126 bits (305), Expect = 2e-29
Identities = 57/59 (96%), Positives = 58/59 (98%)
Frame = +1
Query: 148 MGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTS 324
MGKGSFKYAWVLDKLKAERERGITIDIALWKFET KYYVT+IDAPGHRDFIKNMITGTS
Sbjct: 1 MGKGSFKYAWVLDKLKAERERGITIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTS 59
Score = 62.9 bits (146), Expect = 3e-10
Identities = 31/64 (48%), Positives = 40/64 (62%), Gaps = 6/64 (9%)
Frame = +1
Query: 601 NMLEPSTKMPWFXGWXVERX------ESKADXKCLIEALDAXLAPARPTDKPLRLXLQDV 762
NM+ +++MPWF W +ER E+ A L E LD+ L P+RP+ PLRL LQDV
Sbjct: 53 NMITGTSQMPWFKQWTIERVDPATKKEANASGVTLFEGLDSILPPSRPSGLPLRLPLQDV 112
Query: 763 YKIG 774
YKIG
Sbjct: 113 YKIG 116
>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
Length = 123
Score = 110 bits (264), Expect = 1e-24
Identities = 49/84 (58%), Positives = 64/84 (76%)
Frame = +1
Query: 220 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSXADCAVLIVAAGTGEFEAGISKNGQ 399
+D+ L +F+T +T++DAPGH+DFI NMITG + AD A+L+V A TGEFEAG GQ
Sbjct: 1 MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQ 60
Query: 400 TREHALLAFTLGVKQLIVXVNKMD 471
TREHA+L +LGV QLIV +NK+D
Sbjct: 61 TREHAILVRSLGVTQLIVAINKLD 84
>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
Length = 106
Score = 92.3 bits (219), Expect = 4e-19
Identities = 41/47 (87%), Positives = 44/47 (93%)
Frame = +1
Query: 10 RXKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 150
+ K HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 3 KEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49
>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 359
Score = 52.4 bits (120), Expect = 4e-07
Identities = 38/145 (26%), Positives = 66/145 (45%)
Frame = +1
Query: 37 VIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGI 216
+I H D+GK+T T L+ G I +EA + K D ++ ER+RGI
Sbjct: 15 IISHPDAGKTTLTEKLLLFGGAI---------QEAGAVKSNKIKKGATSDFMEIERQRGI 65
Query: 217 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSXADCAVLIVAAGTGEFEAGISKNG 396
++ ++ F + I+D PGH+DF ++ + D ++++ G E
Sbjct: 66 SVATSVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKGVEE------- 118
Query: 397 QTREHALLAFTLGVKQLIVXVNKMD 471
QT + + + +IV +NKMD
Sbjct: 119 QTEKLVEVCRMRNI-PMIVFINKMD 142
>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
Length = 541
Score = 41.1 bits (92), Expect = 0.001
Identities = 27/109 (24%), Positives = 49/109 (44%)
Frame = +1
Query: 187 KLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSXADCAVLIVAAGTG 366
+ K E ER ITI + Y +D PGH + M+ G + D A+L++A
Sbjct: 49 RFKNELERNITIKLG--------YANAKVDCPGHDILMATMLNGAAVMDAALLLIAGNES 100
Query: 367 EFEAGISKNGQTREHALLAFTLGVKQLIVXVNKMDSTEPPYSEPRFEEI 513
QT EH + +K +++ NK+D + ++ ++++I
Sbjct: 101 ------CPQPQTSEHLAAIEIMKLKHILILQNKIDLVKESQAKDQYDQI 143
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 36.7 bits (81), Expect = 0.021
Identities = 32/116 (27%), Positives = 47/116 (40%), Gaps = 3/116 (2%)
Frame = +1
Query: 28 NIVVIGHVDSGKSTTTGHLIYKCGGI--DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAE 201
N+ VI HVD GKST T L+ K G I K +F ++ L E
Sbjct: 20 NMSVIAHVDHGKSTLTDSLVSKAGIIAAAKAGETRFTDTRKDEQDRCITIKSTAISLYYE 79
Query: 202 RERGITIDIALWKFETSK-YYVTIIDAPGHRDFIKNMITGTSXADCAVLIVAAGTG 366
I K + + + +ID+PGH DF + D A+++V +G
Sbjct: 80 LPESDFEYITQPKDPKERGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 135
>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 36.3 bits (80), Expect = 0.028
Identities = 35/122 (28%), Positives = 50/122 (40%), Gaps = 6/122 (4%)
Frame = +1
Query: 19 THINIVVIGHVDSGKSTTTGHLIYK--CGGIDKRTIEKFE--KEAQEMGKGSFKYAWVLD 186
T I + V+G+V+SGKST G L Y G + + F E Q S + +
Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTYDELDNGQGRARLNLFRHLHEIQSGRTSSISHEILGF 170
Query: 187 KLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTS--XADCAVLIVAAG 360
E A E S +T ID GH ++K I G + D A+L++A
Sbjct: 171 SCTGEVVNYSDGRSAEDVCEQSSKLITFIDLAGHHKYMKTTIFGLTGHSPDYAMLVIAGN 230
Query: 361 TG 366
G
Sbjct: 231 AG 232
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 36.3 bits (80), Expect = 0.028
Identities = 25/65 (38%), Positives = 31/65 (47%)
Frame = +1
Query: 28 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 207
N ++ HVD GKST L+ G I K + K VLDKL+ ERE
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK----------------QVLDKLQVERE 1986
Query: 208 RGITI 222
RGIT+
Sbjct: 1987 RGITV 1991
>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
Length = 240
Score = 35.1 bits (77), Expect = 0.064
Identities = 29/107 (27%), Positives = 45/107 (42%)
Frame = +1
Query: 211 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSXADCAVLIVAAGTGEFEAGISK 390
GIT I + + + +D PGH F G D +++VAA
Sbjct: 123 GITQHIGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAADDDVMP----- 177
Query: 391 NGQTREHALLAFTLGVKQLIVXVNKMDSTEPPYSEPRFEEIKXEVSS 531
QT+E A GV +I +NK+D P + P + IK ++S+
Sbjct: 178 --QTKEAISHAQAAGV-PIIFAINKIDK---PNANP--DNIKTQLST 216
>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 34.3 bits (75), Expect = 0.11
Identities = 24/70 (34%), Positives = 34/70 (48%)
Frame = +1
Query: 262 VTIIDAPGHRDFIKNMITGTSXADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 441
+T ID PGH F G + D VL+VAA G ++ ++ HA+ A
Sbjct: 78 ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDGV----KTQTVESIRHAMHAKV---- 129
Query: 442 QLIVXVNKMD 471
LIV +NK+D
Sbjct: 130 PLIVAINKID 139
>SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12)
Length = 347
Score = 34.3 bits (75), Expect = 0.11
Identities = 31/107 (28%), Positives = 47/107 (43%), Gaps = 9/107 (8%)
Frame = +1
Query: 25 INIVVIGHVDSGKST-----TTGHLIYKCGGIDKRTI-EKFEKEA---QEMGKGSFKYAW 177
+ + V+G+VD+GKST T G L G +R K E E+ +G +
Sbjct: 230 VRVAVVGNVDAGKSTLLGVLTHGELDNGRGTARQRLFRHKHEMESGRTSSVGNDILGFDN 289
Query: 178 VLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITG 318
+ + G +D A E+SK +T ID GH ++K I G
Sbjct: 290 TGQVVNKAEQHGANVDWAKICKESSK-VITFIDLAGHERYLKTTIFG 335
>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
Length = 203
Score = 33.9 bits (74), Expect = 0.15
Identities = 37/130 (28%), Positives = 57/130 (43%), Gaps = 2/130 (1%)
Frame = +1
Query: 22 HINIVVIGHVDSGKSTTTGHL--IYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 195
+ NI V+GHVDSGK++ L DK + ++G SF+ A + + L
Sbjct: 35 NFNIGVLGHVDSGKTSLAKALSTTASTASFDKNPQSQERGITLDLGFSSFQVA-LPEHL- 92
Query: 196 AERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSXADCAVLIVAAGTGEFE 375
R G D+ +T++D PGH IK +I G A +I GT E
Sbjct: 93 --RSAGSEHDLL---------QMTLVDCPGHASLIKTIIGG------AQIIGECGT--IE 133
Query: 376 AGISKNGQTR 405
G ++G+ +
Sbjct: 134 GGFGQSGKVK 143
>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
Length = 783
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 268 IIDAPGHRDFIKNMITGTSXADCAVLIV 351
IID PGH F G+S D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709
>SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1229
Score = 29.1 bits (62), Expect = 4.2
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = -1
Query: 213 TTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 73
TT+T S YPS+ + +F D T N TT V +T+
Sbjct: 236 TTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVPSITA 282
>SB_19088| Best HMM Match : PSGP (HMM E-Value=2.5)
Length = 737
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = -1
Query: 222 DCDTTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 73
D TT+T S YPS+ + +F D T N TT V +++
Sbjct: 344 DFPTTITPSPNITSYPSLMTSAVGNFTSAKSVVFDSTTPNATTLVPSISA 393
Score = 27.9 bits (59), Expect = 9.6
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = -1
Query: 213 TTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 73
TT+T S YPS+ + +F D T N TT V +++
Sbjct: 548 TTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVQSISA 594
>SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3112
Score = 27.9 bits (59), Expect = 9.6
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +1
Query: 526 SSYIKKIGYNPS-AVAFVPISGWHGDNMLE 612
+S+ K +PS + FVP WHG+ M+E
Sbjct: 1084 ASFAKPEVVDPSDKIRFVPAVNWHGEQMIE 1113
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.135 0.410
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,700,332
Number of Sequences: 59808
Number of extensions: 467696
Number of successful extensions: 1199
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1088
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1191
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2107953584
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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