Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0155
(635 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro... 49 6e-07
SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2 ... 49 6e-07
SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1||... 31 0.18
SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha su... 27 3.0
SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pomb... 27 3.0
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 26 4.0
SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase Ubp11|Schizo... 26 5.2
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 25 6.9
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa... 25 6.9
SPBC4C3.03 |||homoserine kinase |Schizosaccharomyces pombe|chr 2... 25 6.9
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces... 25 9.1
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom... 25 9.1
>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 397
Score = 48.8 bits (111), Expect = 6e-07
Identities = 17/33 (51%), Positives = 23/33 (69%)
Frame = +1
Query: 160 HEXVSCDSCLKNNFRGRRYKCLICIDYDLCATC 258
H V CD+CL + G R+ CL+C DYDLC++C
Sbjct: 207 HRSVQCDNCLAHPIVGPRFHCLVCEDYDLCSSC 239
Score = 40.7 bits (91), Expect = 2e-04
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +1
Query: 175 CDSCLKNNFRGRRYKCLICIDYDLCATCYESGATTNQH 288
CD C + RYKC +C DYD+C +C + +N H
Sbjct: 136 CDHC-EQPIHNVRYKCSVCDDYDICESCLTDNSHSNTH 172
Score = 37.5 bits (83), Expect = 0.002
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +1
Query: 127 FQRRSLAKMNRHEXVSCDSCLKNNFRGRRYKCLICIDYDLCATCYESGA 273
F+ + + R V+C++CLK R + C C D+D+C CY A
Sbjct: 46 FEHNNNSPTLRSSSVACNTCLKI-IRNDSFHCTKCFDFDVCRDCYAKQA 93
>SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 437
Score = 48.8 bits (111), Expect = 6e-07
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Frame = +1
Query: 175 CDSCLKNNFRGRRYKCLICIDYDLCATCYESGATTNQHTTEHPMQCILSRS--DFDLYYG 348
C+ C ++ R +C+ C+D+DLC C+ SGA+ H HP + I + S FD +G
Sbjct: 8 CNVCAQDITRSIHIRCVECVDFDLCIPCFTSGASLGTHHPSHPYRIIETNSYPIFDENWG 67
Query: 349 GE 354
+
Sbjct: 68 AD 69
>SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 393
Score = 30.7 bits (66), Expect = 0.18
Identities = 24/88 (27%), Positives = 34/88 (38%)
Frame = +1
Query: 325 SDFDLYYGGEALTLEQSQAYTCPFCNRMGFTDTGLMEHVTAEHADTTLAVVCPVCASMPG 504
SD LY + LT ++ C G T L + H D ++ +V P+CA
Sbjct: 260 SDIMLYVDSKYLTTVKADGL-C-ISTPTGSTAYSLAAGGSLCHPDISVMIVSPICAHSLS 317
Query: 505 GEPNFVTDDFAGHLTLEHXTGSRDLISF 588
P V D A H+ + ISF
Sbjct: 318 LRPIHVPDSMALHVVIPQDAQQSSWISF 345
>SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha
subunit Tfa1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 448
Score = 26.6 bits (56), Expect = 3.0
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 373 SQAYTCPFCNRMGFTDTGLMEHVTAE 450
S+ Y CPFCN+ F+ ++ VT E
Sbjct: 133 SKGYVCPFCNKK-FSSLDVLSLVTNE 157
>SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 372
Score = 26.6 bits (56), Expect = 3.0
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -1
Query: 221 HLYRRPLKLFFKQESQLTXSWRFI 150
H YR+PLKL+ K E W F+
Sbjct: 217 HSYRQPLKLYAKPEELGDMFWPFL 240
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 26.2 bits (55), Expect = 4.0
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +1
Query: 361 TLEQSQAYTCPFCNRMGFTDTGLMEHVTAEH 453
T E +A++C FCNR L HV H
Sbjct: 49 THENVKAFSCSFCNRAFARSDVLNRHVQQMH 79
>SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase
Ubp11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 350
Score = 25.8 bits (54), Expect = 5.2
Identities = 11/37 (29%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Frame = +1
Query: 139 SLAKMNRHEXVS---CDSCLKNNFRGRRYKCLICIDY 240
SL + +R + +S CDSC K++ + + C+ +D+
Sbjct: 208 SLMEADREQHISDYKCDSCFKSSPKHSKTSCIRTVDW 244
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 25.4 bits (53), Expect = 6.9
Identities = 9/38 (23%), Positives = 16/38 (42%)
Frame = +1
Query: 376 QAYTCPFCNRMGFTDTGLMEHVTAEHADTTLAVVCPVC 489
++Y CPFC R+ + H+ + + P C
Sbjct: 2 KSYECPFCKRVFHRQEHQVRHIRSHTGEKPFECSYPSC 39
>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 25.4 bits (53), Expect = 6.9
Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
Frame = +1
Query: 130 QRRSLAKMNRHEXVSCDS-----CLKNNFRGRRYKCLICIDYDLCATCYE 264
Q+ SL+ ++ + DS C N F Y+ Y++C +CY+
Sbjct: 216 QKPSLSNLHENNIDQSDSPQHCYCCGNKFNESYYQSQTAQKYNVCISCYQ 265
>SPBC4C3.03 |||homoserine kinase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 338
Score = 25.4 bits (53), Expect = 6.9
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +2
Query: 488 VHQCQVVSLISSRMTLLAILHSSTXPGL 571
VHQ SLI +LA L+ T PGL
Sbjct: 256 VHQPYRASLIPGLQNILATLNPDTQPGL 283
>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 637
Score = 25.0 bits (52), Expect = 9.1
Identities = 25/95 (26%), Positives = 34/95 (35%), Gaps = 1/95 (1%)
Frame = +1
Query: 277 TNQHTTEHPMQCILSRSDFDLYYGGEALTLEQSQAYTCPFCNRMGFTDTGLMEHVTAEHA 456
TN TT Q + F G TL+ T CN + L+ H HA
Sbjct: 547 TNSSTTATGAQRKRRKFKFGKQIGPVRCTLQNR--VTGEICNTVFSRTYDLIRHQDTIHA 604
Query: 457 DTTLAVVCPVCASMPGGEPNFVTDD-FAGHLTLEH 558
T C +C G + +F D HL ++H
Sbjct: 605 KTRPVFRCEIC----GDQRHFSRHDALVRHLRVKH 635
>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 564
Score = 25.0 bits (52), Expect = 9.1
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +1
Query: 253 TCYESGATTNQHTTEHPMQCILSRSDFDLY 342
+C ES +NQ T M+ R D D+Y
Sbjct: 487 SCKESSEFSNQTTENSEMEFFDDRPDLDMY 516
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,654,284
Number of Sequences: 5004
Number of extensions: 54051
Number of successful extensions: 137
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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