BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0155 (635 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_808| Best HMM Match : ZZ (HMM E-Value=2.9e-05) 176 1e-44 SB_52196| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04 SB_34766| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 2e-04 SB_8334| Best HMM Match : MIB_HERC2 (HMM E-Value=0) 42 3e-04 SB_14518| Best HMM Match : MIB_HERC2 (HMM E-Value=2.4e-38) 41 7e-04 SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.001 SB_8332| Best HMM Match : PDZ (HMM E-Value=1.3e-17) 38 0.005 SB_38321| Best HMM Match : ZZ (HMM E-Value=8.1e-09) 38 0.009 SB_37930| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.15 SB_30003| Best HMM Match : DUF906 (HMM E-Value=0) 32 0.45 SB_21518| Best HMM Match : zf-C2H2 (HMM E-Value=0) 32 0.45 SB_22532| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0 SB_11706| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4 SB_34562| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4 SB_4344| Best HMM Match : zf-C2H2 (HMM E-Value=0) 29 3.2 SB_24569| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2 SB_18588| Best HMM Match : zf-C2H2 (HMM E-Value=0.0061) 29 4.2 SB_44730| Best HMM Match : zf-C2H2 (HMM E-Value=0) 28 5.5 SB_40594| Best HMM Match : Extensin_2 (HMM E-Value=0.083) 28 5.5 SB_16305| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3 SB_395| Best HMM Match : Peptidase_A17 (HMM E-Value=5.9e-05) 28 7.3 SB_47995| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-09) 28 7.3 SB_39048| Best HMM Match : RVT_1 (HMM E-Value=1.9e-23) 28 7.3 SB_23731| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3 SB_57| Best HMM Match : zf-C2H2 (HMM E-Value=0) 27 9.7 SB_14567| Best HMM Match : MFS_1 (HMM E-Value=1.1) 27 9.7 >SB_808| Best HMM Match : ZZ (HMM E-Value=2.9e-05) Length = 681 Score = 176 bits (429), Expect = 1e-44 Identities = 71/112 (63%), Positives = 91/112 (81%) Frame = +1 Query: 139 SLAKMNRHEXVSCDSCLKNNFRGRRYKCLICIDYDLCATCYESGATTNQHTTEHPMQCIL 318 S A VSCDSC K NFRG+R+KCLIC DYDLCATC+E+G TT +HT +HPMQCIL Sbjct: 282 SFASSGYFSCVSCDSCNKGNFRGKRFKCLICYDYDLCATCFENGVTTTRHTADHPMQCIL 341 Query: 319 SRSDFDLYYGGEALTLEQSQAYTCPFCNRMGFTDTGLMEHVTAEHADTTLAV 474 +R+DFDLYYGGEA T +Q Q++TCP+C+++GFT+ L+EHVT+EH+D +L V Sbjct: 342 TRADFDLYYGGEAFTADQPQSFTCPYCSKIGFTEALLLEHVTSEHSDASLEV 393 >SB_52196| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 428 Score = 44.0 bits (99), Expect = 1e-04 Identities = 18/37 (48%), Positives = 21/37 (56%) Frame = +1 Query: 160 HEXVSCDSCLKNNFRGRRYKCLICIDYDLCATCYESG 270 H V CD C N G R+KC+IC D+DLC C G Sbjct: 109 HPGVVCDGC-NVNIMGTRFKCVICPDFDLCMKCEAKG 144 >SB_34766| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 740 Score = 43.2 bits (97), Expect = 2e-04 Identities = 15/43 (34%), Positives = 23/43 (53%) Frame = +1 Query: 160 HEXVSCDSCLKNNFRGRRYKCLICIDYDLCATCYESGATTNQH 288 H ++C++C + G RYKC C+DYD+C C + H Sbjct: 107 HRGITCNTCQASPICGVRYKCGNCVDYDICERCESQDRHNSTH 149 >SB_8334| Best HMM Match : MIB_HERC2 (HMM E-Value=0) Length = 636 Score = 42.3 bits (95), Expect = 3e-04 Identities = 15/43 (34%), Positives = 21/43 (48%) Frame = +1 Query: 160 HEXVSCDSCLKNNFRGRRYKCLICIDYDLCATCYESGATTNQH 288 H +SC C + +G R++C C Y+LC CY QH Sbjct: 78 HSHISCSECHQQGIKGMRWQCADCEGYNLCTACYMGDKHELQH 120 >SB_14518| Best HMM Match : MIB_HERC2 (HMM E-Value=2.4e-38) Length = 742 Score = 41.1 bits (92), Expect = 7e-04 Identities = 15/29 (51%), Positives = 18/29 (62%) Frame = +1 Query: 175 CDSCLKNNFRGRRYKCLICIDYDLCATCY 261 CD C G R+KC C +YDLC+TCY Sbjct: 2 CDGCRMQPIFGMRWKCAECGNYDLCSTCY 30 >SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 3592 Score = 40.3 bits (90), Expect = 0.001 Identities = 14/34 (41%), Positives = 18/34 (52%) Frame = +1 Query: 160 HEXVSCDSCLKNNFRGRRYKCLICIDYDLCATCY 261 H V+CD C G R+KC C D+D C C+ Sbjct: 1179 HPGVTCDGCHTFPIEGSRFKCKTCPDFDYCENCF 1212 >SB_8332| Best HMM Match : PDZ (HMM E-Value=1.3e-17) Length = 1038 Score = 38.3 bits (85), Expect = 0.005 Identities = 14/43 (32%), Positives = 20/43 (46%) Frame = +1 Query: 160 HEXVSCDSCLKNNFRGRRYKCLICIDYDLCATCYESGATTNQH 288 H +SC C + +G R++C C Y+LC Y QH Sbjct: 670 HSHISCSECHQQGIKGMRWQCADCEGYNLCTASYMGDKHELQH 712 >SB_38321| Best HMM Match : ZZ (HMM E-Value=8.1e-09) Length = 584 Score = 37.5 bits (83), Expect = 0.009 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%) Frame = +1 Query: 175 CDSCLKNNFR-GRRYKCLICIDYDLCATCYESGATTNQHTTEH 300 CD C N+F G R+ C C D+DLC C+ G ++H H Sbjct: 25 CDEC--NSFIVGTRFHCNECEDFDLCIGCHTFGKFPSKHIASH 65 >SB_37930| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 707 Score = 33.5 bits (73), Expect = 0.15 Identities = 40/173 (23%), Positives = 65/173 (37%), Gaps = 20/173 (11%) Frame = +1 Query: 100 RPFWCQQV---FFQRRSLA-KMNRH---EXVSCDSCLKN-------NFRGRRYKCLI-CI 234 RPF C+Q F ++ SL + H C C K+ N+ R +KC+ C Sbjct: 183 RPFKCEQCDKGFLKKSSLTYHLTLHTGKRPYQCQECGKSYRLRSELNYHERSHKCVFPCK 242 Query: 235 DYDLCATCYESGATTNQHTTEHPMQ--CILSRSDFDLYYGGEA--LTLEQSQAYTCPFCN 402 + C + S H H ++ C + F + E L++ +C CN Sbjct: 243 E---CGKSFRSSYLLEVHLRRHAIKTKCKYCKEGFATHKELETHVLSVHSDALVSCKLCN 299 Query: 403 RMGFTDTGLMEHVTAEHADTTLAVVCPVCASMPGGEPNFVT-DDFAGHLTLEH 558 + + L H++ H + T C C F+T + GHL+ H Sbjct: 300 ELFEGEKRLRVHISKSHQEET--TKCTFC------RQRFITLKELEGHLSSNH 344 >SB_30003| Best HMM Match : DUF906 (HMM E-Value=0) Length = 2276 Score = 31.9 bits (69), Expect = 0.45 Identities = 11/18 (61%), Positives = 12/18 (66%) Frame = +1 Query: 211 RYKCLICIDYDLCATCYE 264 RY C C DYDLC CY+ Sbjct: 1446 RYHCNECEDYDLCVPCYD 1463 >SB_21518| Best HMM Match : zf-C2H2 (HMM E-Value=0) Length = 376 Score = 31.9 bits (69), Expect = 0.45 Identities = 14/41 (34%), Positives = 20/41 (48%) Frame = +1 Query: 367 EQSQAYTCPFCNRMGFTDTGLMEHVTAEHADTTLAVVCPVC 489 ++ Q Y C C ++ T GL HV HA ++ CP C Sbjct: 203 DEQQTYACKTCQKIFCTPHGLEVHVRRSHA-SSRPYSCPTC 242 >SB_22532| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 698 Score = 30.7 bits (66), Expect = 1.0 Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 2/68 (2%) Frame = +1 Query: 247 CATCYESGATTNQHTTEHPM--QCILSRSDFDLYYGGEALTLEQSQAYTCPFCNRMGFTD 420 C+ Y++ ++ +H H M + + + + D+ +LT +S A+ C FC+R Sbjct: 246 CSKIYDNSSSLARHKARHEMTGKSVNPQEEDDVT---ASLTTMESLAHQCTFCSRSFHDY 302 Query: 421 TGLMEHVT 444 + L +H T Sbjct: 303 SSLAKHTT 310 >SB_11706| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 216 Score = 30.3 bits (65), Expect = 1.4 Identities = 14/43 (32%), Positives = 25/43 (58%) Frame = +2 Query: 410 VLPTLVSWSM*RRNTLTQPLP*FVRCVHQCQVVSLISSRMTLL 538 +L T V + + RNT+ Q LP V C+H+ V+ ++ ++ L Sbjct: 34 ILTTSVIYFLLHRNTVIQMLPKAVSCLHRNTVIQILPKAVSCL 76 >SB_34562| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 978 Score = 29.5 bits (63), Expect = 2.4 Identities = 22/98 (22%), Positives = 34/98 (34%), Gaps = 12/98 (12%) Frame = +1 Query: 241 DLCATCYESGATT-----NQHTTEHPMQCILSRSDFDLYYGGEAL-------TLEQSQAY 384 D C C++ T N H+ E P QC + D +G + + Q + + Sbjct: 149 DQCGRCFKKNETLDHHHQNTHSGEKPYQC----TQCDKLFGSQEILDRHVRAVHNQEKPF 204 Query: 385 TCPFCNRMGFTDTGLMEHVTAEHADTTLAVVCPVCASM 498 C C L +H HA + CP C + Sbjct: 205 KCSKCEESFGWPMQLTDHTRNTHAQVYTSKECPQCGKV 242 >SB_4344| Best HMM Match : zf-C2H2 (HMM E-Value=0) Length = 1080 Score = 29.1 bits (62), Expect = 3.2 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 2/54 (3%) Frame = +1 Query: 286 HTTEHPMQCILSRSDFDLYYGGEA--LTLEQSQAYTCPFCNRMGFTDTGLMEHV 441 HT E P C L F Y + T + Y C FC+++ + LM+HV Sbjct: 840 HTGEKPYPCPLCERAFAKGYNLKTHMRTHTGEKPYKCDFCSKLFSQHSTLMQHV 893 >SB_24569| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1660 Score = 29.1 bits (62), Expect = 3.2 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 4/56 (7%) Frame = +1 Query: 154 NRHEXVSCDSCLKNNFRGRRYKCLICIDY--DLCATCYESGATTNQH--TTEHPMQ 309 N H +SCDSC N +C C + + CAT + + T H T+ H ++ Sbjct: 1195 NSHHLISCDSCDANG-EIVSMRCDDCFQFLCNFCATAHRRMSATRTHNLTSVHKLR 1249 >SB_18588| Best HMM Match : zf-C2H2 (HMM E-Value=0.0061) Length = 503 Score = 28.7 bits (61), Expect = 4.2 Identities = 10/30 (33%), Positives = 15/30 (50%) Frame = +1 Query: 367 EQSQAYTCPFCNRMGFTDTGLMEHVTAEHA 456 E++ + CP CN+ F L H EH+ Sbjct: 29 EETSDFICPMCNKSFFAAEELQSHFDLEHS 58 >SB_44730| Best HMM Match : zf-C2H2 (HMM E-Value=0) Length = 1346 Score = 28.3 bits (60), Expect = 5.5 Identities = 23/92 (25%), Positives = 33/92 (35%), Gaps = 9/92 (9%) Frame = +1 Query: 244 LCATCYESGATTNQ-------HTTEHPMQCILSRSDF--DLYYGGEALTLEQSQAYTCPF 396 +C C +S ATT HT E P +C F G +T + + ++C Sbjct: 1142 ICKHCDKSFATTISLKTHTYIHTGEKPHKCPQCPKTFATSSKLGRHIVTHSEQRPFSCEQ 1201 Query: 397 CNRMGFTDTGLMEHVTAEHADTTLAVVCPVCA 492 C + L H H A VC C+ Sbjct: 1202 CMKSFNRSGDLRRHCMTVHEGKERAFVCKECS 1233 >SB_40594| Best HMM Match : Extensin_2 (HMM E-Value=0.083) Length = 440 Score = 28.3 bits (60), Expect = 5.5 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 2/57 (3%) Frame = +1 Query: 310 CILSRSDFDLYYGGEALTLEQSQA--YTCPFCNRMGFTDTGLMEHVTAEHADTTLAV 474 C DFD E + ++ +A + C C++ +T GL H T H +T A+ Sbjct: 13 CWYCNRDFD----DEKILIQHQKAKHFKCMICHKKLYTGPGLAIHCTQVHKETVSAI 65 >SB_16305| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1122 Score = 27.9 bits (59), Expect = 7.3 Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 8/90 (8%) Frame = +1 Query: 244 LCATCYESGATTNQ-------HTTEHPMQCILSRSDFDLYYG-GEALTLEQSQAYTCPFC 399 +C C +S T+ H+ + P QC + + Y + T + Y C C Sbjct: 621 VCEVCSKSFTTSRSMVRHMLTHSEDRPYQCDVCGKSYKCYEALTKHTTTHSKKPYKCNVC 680 Query: 400 NRMGFTDTGLMEHVTAEHADTTLAVVCPVC 489 ++ L +H+ + T C +C Sbjct: 681 DKSYTRQKMLTDHMYSHEESGTKIYRCVLC 710 >SB_395| Best HMM Match : Peptidase_A17 (HMM E-Value=5.9e-05) Length = 659 Score = 27.9 bits (59), Expect = 7.3 Identities = 17/47 (36%), Positives = 21/47 (44%) Frame = +1 Query: 130 QRRSLAKMNRHEXVSCDSCLKNNFRGRRYKCLICIDYDLCATCYESG 270 Q R L +RH V CDS F+ RR I + LC C + G Sbjct: 160 QDRCLVCEDRHRLVYCDSFKSKPFKERR---KIVYNKRLCRNCLKEG 203 >SB_47995| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-09) Length = 745 Score = 27.9 bits (59), Expect = 7.3 Identities = 12/31 (38%), Positives = 19/31 (61%) Frame = +2 Query: 446 RNTLTQPLP*FVRCVHQCQVVSLISSRMTLL 538 RNT+TQ LP V C+H V+ ++ ++ L Sbjct: 497 RNTVTQILPKAVSCLHPNTVIQILPKAVSCL 527 >SB_39048| Best HMM Match : RVT_1 (HMM E-Value=1.9e-23) Length = 1062 Score = 27.9 bits (59), Expect = 7.3 Identities = 10/33 (30%), Positives = 19/33 (57%) Frame = -1 Query: 500 GIDAHTGQTTARVVSACSAVTCSMRPVSVKPMR 402 G D TG+ A +++ CS + ++R KP++ Sbjct: 265 GNDLETGEQVADLINVCSTMASNVRDAKDKPLK 297 >SB_23731| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1133 Score = 27.9 bits (59), Expect = 7.3 Identities = 17/47 (36%), Positives = 21/47 (44%) Frame = +1 Query: 130 QRRSLAKMNRHEXVSCDSCLKNNFRGRRYKCLICIDYDLCATCYESG 270 Q R L +RH V CDS F+ RR I + LC C + G Sbjct: 153 QDRCLVCEDRHRLVYCDSFKSKPFKERR---KIVYNKRLCRNCLKEG 196 >SB_57| Best HMM Match : zf-C2H2 (HMM E-Value=0) Length = 1498 Score = 27.5 bits (58), Expect = 9.7 Identities = 33/128 (25%), Positives = 46/128 (35%), Gaps = 10/128 (7%) Frame = +1 Query: 112 CQQVFFQRRSLAKMNRHEXVSCDSCLKNNFRGRRYKCLICIDYDLCATCYESGATTNQHT 291 C + F R+SL K R D +KC D+C C+ + A H Sbjct: 1064 CNETFSNRQSLIKHQREVTAEGD-----------FKC------DVCEKCFITKAHLKTHK 1106 Query: 292 TEHPMQ--CILSRSDFD----LYYGGEALTLEQS----QAYTCPFCNRMGFTDTGLMEHV 441 H Q C + FD L A E+S + YTC C+++ + HV Sbjct: 1107 VVHTRQPRCPSCKETFDSKENLKQHSSAGCPEKSSQKKEEYTCEVCDKVFSRVSSYKTHV 1166 Query: 442 TAEHADTT 465 DTT Sbjct: 1167 RFHSKDTT 1174 >SB_14567| Best HMM Match : MFS_1 (HMM E-Value=1.1) Length = 600 Score = 27.5 bits (58), Expect = 9.7 Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 1/25 (4%) Frame = +2 Query: 284 NTLPNTPCSAFFLE-VILIYIMEEK 355 N+LP SAFF+ V L+ +MEEK Sbjct: 541 NSLPERKVSAFFVSYVFLVVVMEEK 565 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 20,518,424 Number of Sequences: 59808 Number of extensions: 438217 Number of successful extensions: 1270 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 1122 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1260 length of database: 16,821,457 effective HSP length: 79 effective length of database: 12,096,625 effective search space used: 1596754500 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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