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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0155
         (635 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_808| Best HMM Match : ZZ (HMM E-Value=2.9e-05)                     176   1e-44
SB_52196| Best HMM Match : No HMM Matches (HMM E-Value=.)              44   1e-04
SB_34766| Best HMM Match : No HMM Matches (HMM E-Value=.)              43   2e-04
SB_8334| Best HMM Match : MIB_HERC2 (HMM E-Value=0)                    42   3e-04
SB_14518| Best HMM Match : MIB_HERC2 (HMM E-Value=2.4e-38)             41   7e-04
SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.001
SB_8332| Best HMM Match : PDZ (HMM E-Value=1.3e-17)                    38   0.005
SB_38321| Best HMM Match : ZZ (HMM E-Value=8.1e-09)                    38   0.009
SB_37930| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.15 
SB_30003| Best HMM Match : DUF906 (HMM E-Value=0)                      32   0.45 
SB_21518| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     32   0.45 
SB_22532| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.0  
SB_11706| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_34562| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_4344| Best HMM Match : zf-C2H2 (HMM E-Value=0)                      29   3.2  
SB_24569| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_18588| Best HMM Match : zf-C2H2 (HMM E-Value=0.0061)                29   4.2  
SB_44730| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     28   5.5  
SB_40594| Best HMM Match : Extensin_2 (HMM E-Value=0.083)              28   5.5  
SB_16305| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_395| Best HMM Match : Peptidase_A17 (HMM E-Value=5.9e-05)           28   7.3  
SB_47995| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-09)                28   7.3  
SB_39048| Best HMM Match : RVT_1 (HMM E-Value=1.9e-23)                 28   7.3  
SB_23731| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_57| Best HMM Match : zf-C2H2 (HMM E-Value=0)                        27   9.7  
SB_14567| Best HMM Match : MFS_1 (HMM E-Value=1.1)                     27   9.7  

>SB_808| Best HMM Match : ZZ (HMM E-Value=2.9e-05)
          Length = 681

 Score =  176 bits (429), Expect = 1e-44
 Identities = 71/112 (63%), Positives = 91/112 (81%)
 Frame = +1

Query: 139 SLAKMNRHEXVSCDSCLKNNFRGRRYKCLICIDYDLCATCYESGATTNQHTTEHPMQCIL 318
           S A       VSCDSC K NFRG+R+KCLIC DYDLCATC+E+G TT +HT +HPMQCIL
Sbjct: 282 SFASSGYFSCVSCDSCNKGNFRGKRFKCLICYDYDLCATCFENGVTTTRHTADHPMQCIL 341

Query: 319 SRSDFDLYYGGEALTLEQSQAYTCPFCNRMGFTDTGLMEHVTAEHADTTLAV 474
           +R+DFDLYYGGEA T +Q Q++TCP+C+++GFT+  L+EHVT+EH+D +L V
Sbjct: 342 TRADFDLYYGGEAFTADQPQSFTCPYCSKIGFTEALLLEHVTSEHSDASLEV 393


>SB_52196| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 428

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 18/37 (48%), Positives = 21/37 (56%)
 Frame = +1

Query: 160 HEXVSCDSCLKNNFRGRRYKCLICIDYDLCATCYESG 270
           H  V CD C   N  G R+KC+IC D+DLC  C   G
Sbjct: 109 HPGVVCDGC-NVNIMGTRFKCVICPDFDLCMKCEAKG 144


>SB_34766| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 740

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +1

Query: 160 HEXVSCDSCLKNNFRGRRYKCLICIDYDLCATCYESGATTNQH 288
           H  ++C++C  +   G RYKC  C+DYD+C  C       + H
Sbjct: 107 HRGITCNTCQASPICGVRYKCGNCVDYDICERCESQDRHNSTH 149


>SB_8334| Best HMM Match : MIB_HERC2 (HMM E-Value=0)
          Length = 636

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +1

Query: 160 HEXVSCDSCLKNNFRGRRYKCLICIDYDLCATCYESGATTNQH 288
           H  +SC  C +   +G R++C  C  Y+LC  CY       QH
Sbjct: 78  HSHISCSECHQQGIKGMRWQCADCEGYNLCTACYMGDKHELQH 120


>SB_14518| Best HMM Match : MIB_HERC2 (HMM E-Value=2.4e-38)
          Length = 742

 Score = 41.1 bits (92), Expect = 7e-04
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = +1

Query: 175 CDSCLKNNFRGRRYKCLICIDYDLCATCY 261
           CD C      G R+KC  C +YDLC+TCY
Sbjct: 2   CDGCRMQPIFGMRWKCAECGNYDLCSTCY 30


>SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3592

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 160  HEXVSCDSCLKNNFRGRRYKCLICIDYDLCATCY 261
            H  V+CD C      G R+KC  C D+D C  C+
Sbjct: 1179 HPGVTCDGCHTFPIEGSRFKCKTCPDFDYCENCF 1212


>SB_8332| Best HMM Match : PDZ (HMM E-Value=1.3e-17)
          Length = 1038

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +1

Query: 160 HEXVSCDSCLKNNFRGRRYKCLICIDYDLCATCYESGATTNQH 288
           H  +SC  C +   +G R++C  C  Y+LC   Y       QH
Sbjct: 670 HSHISCSECHQQGIKGMRWQCADCEGYNLCTASYMGDKHELQH 712


>SB_38321| Best HMM Match : ZZ (HMM E-Value=8.1e-09)
          Length = 584

 Score = 37.5 bits (83), Expect = 0.009
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +1

Query: 175 CDSCLKNNFR-GRRYKCLICIDYDLCATCYESGATTNQHTTEH 300
           CD C  N+F  G R+ C  C D+DLC  C+  G   ++H   H
Sbjct: 25  CDEC--NSFIVGTRFHCNECEDFDLCIGCHTFGKFPSKHIASH 65


>SB_37930| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 707

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 40/173 (23%), Positives = 65/173 (37%), Gaps = 20/173 (11%)
 Frame = +1

Query: 100 RPFWCQQV---FFQRRSLA-KMNRH---EXVSCDSCLKN-------NFRGRRYKCLI-CI 234
           RPF C+Q    F ++ SL   +  H       C  C K+       N+  R +KC+  C 
Sbjct: 183 RPFKCEQCDKGFLKKSSLTYHLTLHTGKRPYQCQECGKSYRLRSELNYHERSHKCVFPCK 242

Query: 235 DYDLCATCYESGATTNQHTTEHPMQ--CILSRSDFDLYYGGEA--LTLEQSQAYTCPFCN 402
           +   C   + S      H   H ++  C   +  F  +   E   L++      +C  CN
Sbjct: 243 E---CGKSFRSSYLLEVHLRRHAIKTKCKYCKEGFATHKELETHVLSVHSDALVSCKLCN 299

Query: 403 RMGFTDTGLMEHVTAEHADTTLAVVCPVCASMPGGEPNFVT-DDFAGHLTLEH 558
            +   +  L  H++  H + T    C  C         F+T  +  GHL+  H
Sbjct: 300 ELFEGEKRLRVHISKSHQEET--TKCTFC------RQRFITLKELEGHLSSNH 344


>SB_30003| Best HMM Match : DUF906 (HMM E-Value=0)
          Length = 2276

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +1

Query: 211  RYKCLICIDYDLCATCYE 264
            RY C  C DYDLC  CY+
Sbjct: 1446 RYHCNECEDYDLCVPCYD 1463


>SB_21518| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 376

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +1

Query: 367 EQSQAYTCPFCNRMGFTDTGLMEHVTAEHADTTLAVVCPVC 489
           ++ Q Y C  C ++  T  GL  HV   HA ++    CP C
Sbjct: 203 DEQQTYACKTCQKIFCTPHGLEVHVRRSHA-SSRPYSCPTC 242


>SB_22532| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 698

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
 Frame = +1

Query: 247 CATCYESGATTNQHTTEHPM--QCILSRSDFDLYYGGEALTLEQSQAYTCPFCNRMGFTD 420
           C+  Y++ ++  +H   H M  + +  + + D+     +LT  +S A+ C FC+R     
Sbjct: 246 CSKIYDNSSSLARHKARHEMTGKSVNPQEEDDVT---ASLTTMESLAHQCTFCSRSFHDY 302

Query: 421 TGLMEHVT 444
           + L +H T
Sbjct: 303 SSLAKHTT 310


>SB_11706| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 216

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = +2

Query: 410 VLPTLVSWSM*RRNTLTQPLP*FVRCVHQCQVVSLISSRMTLL 538
           +L T V + +  RNT+ Q LP  V C+H+  V+ ++   ++ L
Sbjct: 34  ILTTSVIYFLLHRNTVIQMLPKAVSCLHRNTVIQILPKAVSCL 76


>SB_34562| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 978

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 22/98 (22%), Positives = 34/98 (34%), Gaps = 12/98 (12%)
 Frame = +1

Query: 241 DLCATCYESGATT-----NQHTTEHPMQCILSRSDFDLYYGGEAL-------TLEQSQAY 384
           D C  C++   T      N H+ E P QC    +  D  +G + +          Q + +
Sbjct: 149 DQCGRCFKKNETLDHHHQNTHSGEKPYQC----TQCDKLFGSQEILDRHVRAVHNQEKPF 204

Query: 385 TCPFCNRMGFTDTGLMEHVTAEHADTTLAVVCPVCASM 498
            C  C         L +H    HA    +  CP C  +
Sbjct: 205 KCSKCEESFGWPMQLTDHTRNTHAQVYTSKECPQCGKV 242


>SB_4344| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1080

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
 Frame = +1

Query: 286  HTTEHPMQCILSRSDFDLYYGGEA--LTLEQSQAYTCPFCNRMGFTDTGLMEHV 441
            HT E P  C L    F   Y  +    T    + Y C FC+++    + LM+HV
Sbjct: 840  HTGEKPYPCPLCERAFAKGYNLKTHMRTHTGEKPYKCDFCSKLFSQHSTLMQHV 893


>SB_24569| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1660

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
 Frame = +1

Query: 154  NRHEXVSCDSCLKNNFRGRRYKCLICIDY--DLCATCYESGATTNQH--TTEHPMQ 309
            N H  +SCDSC  N       +C  C  +  + CAT +   + T  H  T+ H ++
Sbjct: 1195 NSHHLISCDSCDANG-EIVSMRCDDCFQFLCNFCATAHRRMSATRTHNLTSVHKLR 1249


>SB_18588| Best HMM Match : zf-C2H2 (HMM E-Value=0.0061)
          Length = 503

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +1

Query: 367 EQSQAYTCPFCNRMGFTDTGLMEHVTAEHA 456
           E++  + CP CN+  F    L  H   EH+
Sbjct: 29  EETSDFICPMCNKSFFAAEELQSHFDLEHS 58


>SB_44730| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1346

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 23/92 (25%), Positives = 33/92 (35%), Gaps = 9/92 (9%)
 Frame = +1

Query: 244  LCATCYESGATTNQ-------HTTEHPMQCILSRSDF--DLYYGGEALTLEQSQAYTCPF 396
            +C  C +S ATT         HT E P +C      F      G   +T  + + ++C  
Sbjct: 1142 ICKHCDKSFATTISLKTHTYIHTGEKPHKCPQCPKTFATSSKLGRHIVTHSEQRPFSCEQ 1201

Query: 397  CNRMGFTDTGLMEHVTAEHADTTLAVVCPVCA 492
            C +       L  H    H     A VC  C+
Sbjct: 1202 CMKSFNRSGDLRRHCMTVHEGKERAFVCKECS 1233


>SB_40594| Best HMM Match : Extensin_2 (HMM E-Value=0.083)
          Length = 440

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = +1

Query: 310 CILSRSDFDLYYGGEALTLEQSQA--YTCPFCNRMGFTDTGLMEHVTAEHADTTLAV 474
           C     DFD     E + ++  +A  + C  C++  +T  GL  H T  H +T  A+
Sbjct: 13  CWYCNRDFD----DEKILIQHQKAKHFKCMICHKKLYTGPGLAIHCTQVHKETVSAI 65


>SB_16305| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1122

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 8/90 (8%)
 Frame = +1

Query: 244 LCATCYESGATTNQ-------HTTEHPMQCILSRSDFDLYYG-GEALTLEQSQAYTCPFC 399
           +C  C +S  T+         H+ + P QC +    +  Y    +  T    + Y C  C
Sbjct: 621 VCEVCSKSFTTSRSMVRHMLTHSEDRPYQCDVCGKSYKCYEALTKHTTTHSKKPYKCNVC 680

Query: 400 NRMGFTDTGLMEHVTAEHADTTLAVVCPVC 489
           ++       L +H+ +     T    C +C
Sbjct: 681 DKSYTRQKMLTDHMYSHEESGTKIYRCVLC 710


>SB_395| Best HMM Match : Peptidase_A17 (HMM E-Value=5.9e-05)
          Length = 659

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 17/47 (36%), Positives = 21/47 (44%)
 Frame = +1

Query: 130 QRRSLAKMNRHEXVSCDSCLKNNFRGRRYKCLICIDYDLCATCYESG 270
           Q R L   +RH  V CDS     F+ RR    I  +  LC  C + G
Sbjct: 160 QDRCLVCEDRHRLVYCDSFKSKPFKERR---KIVYNKRLCRNCLKEG 203


>SB_47995| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-09)
          Length = 745

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 446 RNTLTQPLP*FVRCVHQCQVVSLISSRMTLL 538
           RNT+TQ LP  V C+H   V+ ++   ++ L
Sbjct: 497 RNTVTQILPKAVSCLHPNTVIQILPKAVSCL 527


>SB_39048| Best HMM Match : RVT_1 (HMM E-Value=1.9e-23)
          Length = 1062

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -1

Query: 500 GIDAHTGQTTARVVSACSAVTCSMRPVSVKPMR 402
           G D  TG+  A +++ CS +  ++R    KP++
Sbjct: 265 GNDLETGEQVADLINVCSTMASNVRDAKDKPLK 297


>SB_23731| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1133

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 17/47 (36%), Positives = 21/47 (44%)
 Frame = +1

Query: 130 QRRSLAKMNRHEXVSCDSCLKNNFRGRRYKCLICIDYDLCATCYESG 270
           Q R L   +RH  V CDS     F+ RR    I  +  LC  C + G
Sbjct: 153 QDRCLVCEDRHRLVYCDSFKSKPFKERR---KIVYNKRLCRNCLKEG 196


>SB_57| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1498

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 33/128 (25%), Positives = 46/128 (35%), Gaps = 10/128 (7%)
 Frame = +1

Query: 112  CQQVFFQRRSLAKMNRHEXVSCDSCLKNNFRGRRYKCLICIDYDLCATCYESGATTNQHT 291
            C + F  R+SL K  R      D           +KC      D+C  C+ + A    H 
Sbjct: 1064 CNETFSNRQSLIKHQREVTAEGD-----------FKC------DVCEKCFITKAHLKTHK 1106

Query: 292  TEHPMQ--CILSRSDFD----LYYGGEALTLEQS----QAYTCPFCNRMGFTDTGLMEHV 441
              H  Q  C   +  FD    L     A   E+S    + YTC  C+++    +    HV
Sbjct: 1107 VVHTRQPRCPSCKETFDSKENLKQHSSAGCPEKSSQKKEEYTCEVCDKVFSRVSSYKTHV 1166

Query: 442  TAEHADTT 465
                 DTT
Sbjct: 1167 RFHSKDTT 1174


>SB_14567| Best HMM Match : MFS_1 (HMM E-Value=1.1)
          Length = 600

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +2

Query: 284 NTLPNTPCSAFFLE-VILIYIMEEK 355
           N+LP    SAFF+  V L+ +MEEK
Sbjct: 541 NSLPERKVSAFFVSYVFLVVVMEEK 565


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,518,424
Number of Sequences: 59808
Number of extensions: 438217
Number of successful extensions: 1270
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1260
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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