Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0155
         (635 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    32   0.004
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    29   0.050
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      27   0.15 
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              23   3.3  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   3.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   3.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.3  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   4.3  
AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase pro...    22   4.3  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   5.7  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   5.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   5.7  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   7.6  

>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 32.3 bits (70), Expect = 0.004
 Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
 Frame = +1

Query: 301 PMQCILSRSDFDLYYGGEALTL---EQSQA-YTCPFCNRMGFTDTGLMEHVTAEH 453
           P +C   R +F  YY  +       EQS   Y C FCNR   T   L  H + +H
Sbjct: 5   PQECPYCRRNFSCYYSLKRHFQDKHEQSDTLYVCEFCNRRYRTKNSLTTHKSLQH 59



 Score = 25.0 bits (52), Expect = 0.61
 Identities = 10/34 (29%), Positives = 13/34 (38%)
 Frame = +1

Query: 388 CPFCNRMGFTDTGLMEHVTAEHADTTLAVVCPVC 489
           CP+C R       L  H   +H  +    VC  C
Sbjct: 8   CPYCRRNFSCYYSLKRHFQDKHEQSDTLYVCEFC 41


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 28.7 bits (61), Expect = 0.050
 Identities = 12/54 (22%), Positives = 23/54 (42%)
 Frame = +1

Query: 382 YTCPFCNRMGFTDTGLMEHVTAEHADTTLAVVCPVCASMPGGEPNFVTDDFAGH 543
           +TC  C ++  +   L  HV  +HA+      C +C  +     + +T  +  H
Sbjct: 6   FTCQLCGKVLCSKASLKRHVADKHAERQEEYRCVICERVYCSRNSLMTHIYTYH 59



 Score = 25.0 bits (52), Expect = 0.61
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +1

Query: 367 EQSQAYTCPFCNRMGFTDTGLMEHVTAEH 453
           E+ + Y C  C R+  +   LM H+   H
Sbjct: 31  ERQEEYRCVICERVYCSRNSLMTHIYTYH 59


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 27.1 bits (57), Expect = 0.15
 Identities = 11/36 (30%), Positives = 15/36 (41%)
 Frame = +1

Query: 382 YTCPFCNRMGFTDTGLMEHVTAEHADTTLAVVCPVC 489
           YTC  C +   T   L  H   +H     + VC +C
Sbjct: 372 YTCDVCGKTLSTKLTLKRHKEQQHFQPLNSAVCALC 407


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +1

Query: 376 QAYTCPFCNRMG 411
           +AYTCP C   G
Sbjct: 71  RAYTCPICGACG 82


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +1

Query: 436 HVTAEHADTTLAVVCPVCA 492
           H+     DTT  VVC  C+
Sbjct: 342 HMLGGRTDTTYRVVCDACS 360


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
 Frame = +1

Query: 352 EALTLEQSQAYTCPFCNRMGFTDTGLMEHVTAE-HADTT 465
           EA+TLE +  Y C   N  G     +   VTA  H + T
Sbjct: 298 EAVTLEDNGIYRCSASNPGGEASAEIRLIVTAPLHVEVT 336


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
 Frame = +1

Query: 352 EALTLEQSQAYTCPFCNRMGFTDTGLMEHVTAE-HADTT 465
           EA+TLE +  Y C   N  G     +   VTA  H + T
Sbjct: 298 EAVTLEDNGIYRCSASNPGGEASAEIRLIVTAPLHVEVT 336


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +2

Query: 227 FASITTCALLATSPAL 274
           F +ITTC ++  +PA+
Sbjct: 56  FGNITTCTVIIKNPAM 71


>AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase
           protein.
          Length = 85

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +2

Query: 545 LHSSTXPGLEISSLFWM 595
           LH++    L +S+LFW+
Sbjct: 24  LHNNMCTSLNLSNLFWL 40


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 7/25 (28%), Positives = 16/25 (64%)
 Frame = +1

Query: 163 EXVSCDSCLKNNFRGRRYKCLICID 237
           + V+  +CL+ +F G   +CL+ ++
Sbjct: 419 QLVNSVNCLRESFIGTLQRCLLSLE 443


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 7/25 (28%), Positives = 16/25 (64%)
 Frame = +1

Query: 163 EXVSCDSCLKNNFRGRRYKCLICID 237
           + V+  +CL+ +F G   +CL+ ++
Sbjct: 457 QLVNSVNCLRESFIGTLQRCLLSLE 481


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = -3

Query: 105 RPLFWELLNLXM*NRQHNKLLLTKYKVYNKNFQ 7
           R + W+L NL + N   NK+   +   + +N +
Sbjct: 495 RGMLWDLPNLQILNLARNKVQHVERYAFERNMR 527


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 553 EHXTGSRDLISFLDEP 600
           EH     DL+S LDEP
Sbjct: 644 EHVLAHNDLMSPLDEP 659


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,703
Number of Sequences: 438
Number of extensions: 3902
Number of successful extensions: 18
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)