Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0154
         (732 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha...    28   1.6  
SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase Pl...    27   2.8  
SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces...    27   2.8  
SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    26   6.4  
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo...    25   8.4  

>SPBC660.15 |||mRNA cleavage factor complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +2

Query: 77  GIPTEPPSRSGLRTGAYSGRSPDG 148
           G+P  P   SG   G Y GR+P G
Sbjct: 423 GVPFSPSMPSGSSRGGYHGRNPGG 446


>SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase
           Plh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 623

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = +1

Query: 193 SRWRSPIETSVPPSPXIRI 249
           S+W +P+ETS+P +P ++I
Sbjct: 462 SKWINPLETSLPYAPDMKI 480


>SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 366

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +3

Query: 132 DDLLTAVITPTMSRDYYR-PWKQMAIANRDVGSTITXNKDKFQVNLDVQHFSPEEIS 299
           D  +   I  ++S++Y + P+K +  A     +  T ++   ++N D + F+PE IS
Sbjct: 107 DSAVAKTIEESISKNYPKCPFKVIGEAELLNRTIATDSRGNIEINADNEKFNPEVIS 163


>SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = -1

Query: 501 ARSSWQPESWERSRSAHR 448
           ++  WQP+SW+ SR+ ++
Sbjct: 70  SKEGWQPKSWKSSRNENK 87


>SPCC777.13 |vps35||retromer complex subunit
           Vps35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
 Frame = +3

Query: 102 DQDFG--LALTPDDLLTAVITPTMSR--DYYRPWKQMAIANRDVGSTITXNKDKFQVNLD 269
           D  FG  + L+P   +T ++   ++R  DY +   +   +N D   T+T      ++N +
Sbjct: 229 DTYFGTVIKLSPSVNVTQLVVAMLNRLTDYVQREYESDSSNEDESETVTEKLGDIKINEE 288

Query: 270 VQHFSPEE 293
           VQ    +E
Sbjct: 289 VQQKDEQE 296


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,453,356
Number of Sequences: 5004
Number of extensions: 43939
Number of successful extensions: 124
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)