Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0154
(732 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0483 - 8804021-8804485 42 7e-04
03_02_0484 + 8805053-8805538 41 9e-04
03_02_0478 + 8775892-8776377 40 0.002
01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457 40 0.003
01_01_0229 - 1943473-1943922 40 0.003
03_02_0485 - 8808139-8808618 39 0.004
01_01_0231 + 1951047-1951499 39 0.005
01_01_0227 + 1933247-1933699 36 0.044
02_02_0077 - 6586638-6587165 34 0.13
02_01_0222 + 1450233-1450766 34 0.13
11_02_0041 - 7669692-7670312 31 0.71
05_02_0003 + 5520331-5520476,5520572-5520644,5520762-5520928,552... 30 2.2
03_05_0543 - 25404630-25405408,25405461-25405605 30 2.2
06_01_1017 - 7951985-7952425 28 6.6
12_01_0946 + 9376037-9376318 28 8.8
08_01_0539 + 4679392-4681282,4682060-4682104,4682403-4683560,468... 28 8.8
05_03_0001 - 7269231-7269436,7269536-7270100,7270600-7270821,727... 28 8.8
>03_02_0483 - 8804021-8804485
Length = 154
Score = 41.5 bits (93), Expect = 7e-04
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 8/92 (8%)
Frame = +3
Query: 267 DVQHFSPEEISVKTADGYVI-VEXKHXERQDE-----HGY--ISXXFTRRYALPENCNPD 422
DV EE+ V+ DG V+ + + + Q+E H S F RR+ LPEN P+
Sbjct: 63 DVPGLKKEEVKVEVEDGNVLQISGERIKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPE 122
Query: 423 TVESRLSSDGVLTVIAPXTPAATKNERAVPIT 518
+++ + +GVLTV P + +++ IT
Sbjct: 123 QIKASM-ENGVLTVTVPKEEPKKPDVKSIQIT 153
>03_02_0484 + 8805053-8805538
Length = 161
Score = 41.1 bits (92), Expect = 9e-04
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 8/92 (8%)
Frame = +3
Query: 267 DVQHFSPEEISVKTADGYVI-VEXKHXERQDE-----HGY--ISXXFTRRYALPENCNPD 422
DV EE+ V+ DG V+ + + + Q+E H S F RR+ LPEN P+
Sbjct: 70 DVPGLKKEEVKVEVEDGNVLQISGERSKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPE 129
Query: 423 TVESRLSSDGVLTVIAPXTPAATKNERAVPIT 518
+++ + +GVLTV P + +++ +T
Sbjct: 130 QIKASM-ENGVLTVTVPKEEPKKPDVKSIQVT 160
>03_02_0478 + 8775892-8776377
Length = 161
Score = 40.3 bits (90), Expect = 0.002
Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 8/92 (8%)
Frame = +3
Query: 267 DVQHFSPEEISVKTADGYVI-VEXKHXERQDE-----HGY--ISXXFTRRYALPENCNPD 422
DV EE+ V+ DG ++ + + + Q+E H S F RR+ LP+N P+
Sbjct: 70 DVPGLKKEEVKVEVDDGNILQISGERNKEQEEKTDQWHRVERSSGKFLRRFRLPDNAKPE 129
Query: 423 TVESRLSSDGVLTVIAPXTPAATKNERAVPIT 518
+++ + +GVLTV P A + +++ I+
Sbjct: 130 QIKASM-ENGVLTVTVPKEEAKKPDVKSIQIS 160
>01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457
Length = 438
Score = 39.5 bits (88), Expect = 0.003
Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 8/114 (7%)
Frame = +3
Query: 201 AIANRDVGSTITXNKDKFQVNLDVQHFSPEEISVKTADGYVIV--EXKHXERQDEHGY-- 368
A AN + T F+ D+ EE+ V+ +G V+V + E++D++
Sbjct: 39 AFANARIDWKETPESHVFKA--DLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWH 96
Query: 369 ----ISXXFTRRYALPENCNPDTVESRLSSDGVLTVIAPXTPAATKNERAVPIT 518
S F RR+ LPEN D V++ L +GVLTV P +A+ I+
Sbjct: 97 RVERSSGQFMRRFRLPENAKVDQVKAGL-ENGVLTVTVPKAEVKKPEVKAIEIS 149
>01_01_0229 - 1943473-1943922
Length = 149
Score = 39.5 bits (88), Expect = 0.003
Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 8/114 (7%)
Frame = +3
Query: 201 AIANRDVGSTITXNKDKFQVNLDVQHFSPEEISVKTADGYVIV--EXKHXERQDEHGY-- 368
A AN V T F+ D+ EE+ V+ +G V+V + E++D++
Sbjct: 38 AFANARVDWKETPESHVFKA--DLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWH 95
Query: 369 ----ISXXFTRRYALPENCNPDTVESRLSSDGVLTVIAPXTPAATKNERAVPIT 518
S F RR+ LPEN D V++ + +GVLTV P +A+ I+
Sbjct: 96 RVERSSGQFMRRFRLPENAKVDQVKASM-ENGVLTVTVPKAEVKKPEVKAIEIS 148
>03_02_0485 - 8808139-8808618
Length = 159
Score = 39.1 bits (87), Expect = 0.004
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 8/92 (8%)
Frame = +3
Query: 267 DVQHFSPEEISVKTADGYVI-VEXKHXERQDEHG-------YISXXFTRRYALPENCNPD 422
DV EE+ V+ DG ++ + + Q+E S F RR+ LPEN P+
Sbjct: 68 DVPGLKKEEVKVEVDDGNILQISGERSREQEEKSDKWHRVERSSGKFLRRFRLPENTKPE 127
Query: 423 TVESRLSSDGVLTVIAPXTPAATKNERAVPIT 518
+++ + +GVLTV P + +++ I+
Sbjct: 128 QIKASM-ENGVLTVTVPKEEPKKPDVKSIQIS 158
>01_01_0231 + 1951047-1951499
Length = 150
Score = 38.7 bits (86), Expect = 0.005
Identities = 32/114 (28%), Positives = 52/114 (45%), Gaps = 8/114 (7%)
Frame = +3
Query: 201 AIANRDVGSTITXNKDKFQVNLDVQHFSPEEISVKTADGYVIV--EXKHXERQDEHGY-- 368
A AN + T F+ D+ EE+ V+ +G V+V + E++D++
Sbjct: 39 AFANARIDWKETPESHVFKA--DLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWH 96
Query: 369 ----ISXXFTRRYALPENCNPDTVESRLSSDGVLTVIAPXTPAATKNERAVPIT 518
S F RR+ LPEN D V++ + +GVLTV P +A+ I+
Sbjct: 97 RVERSSGQFMRRFRLPENAKVDQVKAGM-ENGVLTVTVPKAEVKKPEVKAIEIS 149
>01_01_0227 + 1933247-1933699
Length = 150
Score = 35.5 bits (78), Expect = 0.044
Identities = 21/64 (32%), Positives = 30/64 (46%)
Frame = +3
Query: 327 VEXKHXERQDEHGYISXXFTRRYALPENCNPDTVESRLSSDGVLTVIAPXTPAATKNERA 506
V+ K+ ER S F RR+ LP D V + + + GVLTV P +A
Sbjct: 87 VDGKNDERWHHVERSSGKFQRRFRLPRGARVDQVSASMDN-GVLTVTVPKEETKKPQLKA 145
Query: 507 VPIT 518
+PI+
Sbjct: 146 IPIS 149
>02_02_0077 - 6586638-6587165
Length = 175
Score = 33.9 bits (74), Expect = 0.13
Identities = 41/147 (27%), Positives = 60/147 (40%), Gaps = 14/147 (9%)
Frame = +3
Query: 129 PDDLLTAVITPTMSRDYYRPWKQMAIANRDVGSTITXNKDKFQVNLDVQHFSPEEISVKT 308
PD+L + PT R Y R + MA DV + +D+ +P ++ V+
Sbjct: 25 PDELERQLNPPT--RAYVRDRRAMANTPMDVKELRASGA--LVLAVDMPGVAPADVRVEV 80
Query: 309 ADGYVIVEXKHXERQ----DEHG----YISXX-----FTRRYALPENCNPDTVESRLSSD 449
DG V+ R D+ G Y+ F RR+ LPE+ + D V + D
Sbjct: 81 EDGNVLAISGERRRPAGDGDDGGEGVKYLRMERRMGKFMRRFPLPESADLDGVRAEY-KD 139
Query: 450 GVLTV-IAPXTPAATKNERAVPITQTG 527
GVLTV + P K R V + G
Sbjct: 140 GVLTVTVDKKPPPEPKKPRVVEVKVAG 166
>02_01_0222 + 1450233-1450766
Length = 177
Score = 33.9 bits (74), Expect = 0.13
Identities = 19/49 (38%), Positives = 24/49 (48%)
Frame = +3
Query: 372 SXXFTRRYALPENCNPDTVESRLSSDGVLTVIAPXTPAATKNERAVPIT 518
S F R LP N N D V + L + GVLT+ P + R +PIT
Sbjct: 129 SERFVRTVRLPPNANTDGVHAALDN-GVLTITIPKDNDRKPHARIIPIT 176
>11_02_0041 - 7669692-7670312
Length = 206
Score = 31.5 bits (68), Expect = 0.71
Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +3
Query: 381 FTRRYALPENCNPDTVESRLSSDGVLTVIAPXTPAATKNE-RAVPITQTG 527
F RR+ +P + V +RL DGVLTV P P E R V I G
Sbjct: 142 FWRRFRMPPGADVGRVAARLD-DGVLTVTVPKVPGHRGREPRVVAIDGAG 190
>05_02_0003 +
5520331-5520476,5520572-5520644,5520762-5520928,
5520929-5521223,5521531-5521674,5521756-5521890,
5522004-5522093,5523702-5523809,5523905-5523986,
5525362-5525417,5525888-5525986,5526090-5526394,
5526898-5527075,5527167-5527280,5527376-5527507,
5527614-5527718
Length = 742
Score = 29.9 bits (64), Expect = 2.2
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Frame = +3
Query: 354 DEHGYISXXFTRRYA-LPENCNPDTVESRLSSDGVLTVIAPXTPAATKNERAVPITQTGP 530
D+ + FTR Y+ N RL + ++ P + K++ V T P
Sbjct: 323 DDISTVCKWFTREYSDTTYGKNAQLAAKRLKATQPIST-QPDKEESNKDDLFVEPIYTIP 381
Query: 531 VRKEIKEPTAEAESNETK 584
+KE +PT + ESN T+
Sbjct: 382 AKKEEVQPTKDLESNSTE 399
>03_05_0543 - 25404630-25405408,25405461-25405605
Length = 307
Score = 29.9 bits (64), Expect = 2.2
Identities = 23/102 (22%), Positives = 45/102 (44%), Gaps = 7/102 (6%)
Frame = +3
Query: 276 HFSPEEISVKTADGYVIVEXK-HXERQDEH---GYISXXFTRRYALPENCNPDTVESRLS 443
H S +++ K + V+V+ H + E G F + + LP +CN D + ++
Sbjct: 42 HLSLDQLGFKREEIRVLVDNHGHLRTRGERPVAGNRWSRFQKDFQLPADCNVDGIRAKFE 101
Query: 444 SDGVLTVIAPXTPA-ATKNERAVPIT--QTGPVRKEIKEPTA 560
++ + + TP+ T + P+T P + E + P A
Sbjct: 102 NEALTITLPKKTPSPLTPSPTPSPVTPPPQQPPQPEPRRPPA 143
>06_01_1017 - 7951985-7952425
Length = 146
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +3
Query: 381 FTRRYALPENCNPDTVESRLSSDGVLTVIAPXTPAATKNERAVPI 515
F R ALP + + + + + GVLTV+ P PA + R PI
Sbjct: 98 FAREVALPAEVRVEQIRASVDN-GVLTVVVPKEPAPAR-PRTRPI 140
>12_01_0946 + 9376037-9376318
Length = 93
Score = 27.9 bits (59), Expect = 8.8
Identities = 15/57 (26%), Positives = 26/57 (45%)
Frame = +3
Query: 150 VITPTMSRDYYRPWKQMAIANRDVGSTITXNKDKFQVNLDVQHFSPEEISVKTADGY 320
++T T S RPWK N D T T + + + +++ +P +I + GY
Sbjct: 2 IVTTTSSTTTTRPWKTPTRENHDNQHTPTRSHN---IQANIRQDTPPDIDFRDRHGY 55
>08_01_0539 +
4679392-4681282,4682060-4682104,4682403-4683560,
4683834-4684204,4684290-4684835,4684927-4685027,
4685117-4685933,4686025-4686213,4686313-4686384,
4686477-4686587,4686647-4686652,4686694-4686794,
4687714-4687813,4687891-4687986,4688157-4688273,
4688367-4688492,4688566-4688619,4688745-4688992,
4689087-4689195,4689284-4689583,4689799-4689963
Length = 2240
Score = 27.9 bits (59), Expect = 8.8
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 7/56 (12%)
Frame = +2
Query: 32 RMLK*SKNVSAAIHPGIPTEPPSRSGL-------RTGAYSGRSPDGRHHANDVQRL 178
R++K + I P + PPSRS R+ + G S +HH +D Q L
Sbjct: 811 RVVKDQSSSELRIKPKVADRPPSRSSRSHSIGTDRSSTHEGSSHSKKHHEHDSQSL 866
>05_03_0001 -
7269231-7269436,7269536-7270100,7270600-7270821,
7270913-7271155,7271227-7271481,7272017-7272370,
7273082-7273164,7273250-7273630,7273874-7274027
Length = 820
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/41 (29%), Positives = 18/41 (43%)
Frame = +2
Query: 83 PTEPPSRSGLRTGAYSGRSPDGRHHANDVQRLLPSVEADGD 205
P + G R A P+G A D + L+ E+DG+
Sbjct: 60 PRRSGAEQGARRAAAGSEKPEGSEEAEDEEFLVEEYESDGE 100
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,633,377
Number of Sequences: 37544
Number of extensions: 324396
Number of successful extensions: 1074
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1074
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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