Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0153
(775 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 388 e-109
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo... 314 7e-87
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 296 2e-81
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc... 287 1e-78
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha... 250 2e-67
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos... 207 1e-54
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 120 3e-28
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 110 2e-25
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 73 3e-14
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom... 29 0.98
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 5.2
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb... 26 5.2
SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomy... 25 9.1
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 9.1
SPBC32F12.02 |rec14||recombination protein Rec14|Schizosaccharom... 25 9.1
SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces... 25 9.1
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 25 9.1
SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2 |Schizosacc... 25 9.1
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 25 9.1
SPBC19C2.11c |||mitochondrial outer membrane protein |Schizosacc... 25 9.1
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 388 bits (956), Expect = e-109
Identities = 190/253 (75%), Positives = 213/253 (84%), Gaps = 1/253 (0%)
Frame = +3
Query: 3 RXTVIKYMTDGMLLRECLMDLDLKAYSVIMLDEAHXRTIHTDVLFGLLKQAVQKRPELKL 182
R T IKYMTDGML RECL+D L YSVI+LDEAH RT+ TDVLFGLLK V KRP+LKL
Sbjct: 600 RMTQIKYMTDGMLQRECLVDPLLSKYSVIILDEAHERTVATDVLFGLLKGTVLKRPDLKL 659
Query: 183 IVTSATLDAVKFSQYFFEAPIFTIPGRTFPVEVLYTKEPETDYLDASLITVMQIHLREPP 362
IVTSATLDA +FS YF++ PIFTIPGR++PVE++YTK+PE DYLDA+L+TVMQIHL E P
Sbjct: 660 IVTSATLDAERFSSYFYKCPIFTIPGRSYPVEIMYTKQPEADYLDAALMTVMQIHLSEGP 719
Query: 363 GDILLFLTGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFEPAPPGSR 542
GDIL+FLTGQEEIDT+CEILYER K LG +PEL+ILPVYSALPSE+Q+RIFEPAPPG R
Sbjct: 720 GDILVFLTGQEEIDTSCEILYERSKMLGDSIPELVILPVYSALPSEIQSRIFEPAPPGGR 779
Query: 543 XVVIATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGMDSLGVTPI-XAXGGETSRPAGR 719
VVIATNIAETSLTIDGIYYVVDPGFVKQ ++ K GMDSL VTPI A + S AGR
Sbjct: 780 KVVIATNIAETSLTIDGIYYVVDPGFVKQSCFDPKLGMDSLIVTPISQAQARQRSGRAGR 839
Query: 720 AAPGPGKCYRLYT 758
GPGKCYRLYT
Sbjct: 840 T--GPGKCYRLYT 850
>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1055
Score = 314 bits (772), Expect = 7e-87
Identities = 142/251 (56%), Positives = 195/251 (77%), Gaps = 1/251 (0%)
Frame = +3
Query: 9 TVIKYMTDGMLLRECLMDLDLKAYSVIMLDEAHXRTIHTDVLFGLLKQAVQKRPELKLIV 188
TVIKY+TDGMLLRE L + DL +YSVI++DEAH RT+HTD+LFGL+K + RP+LK+++
Sbjct: 510 TVIKYLTDGMLLREFLTEPDLASYSVIIIDEAHERTLHTDILFGLVKDIARFRPDLKVLI 569
Query: 189 TSATLDAVKFSQYFFEAPIFTIPGRTFPVEVLYTKEPETDYLDASLITVMQIHLREPPGD 368
+SAT+DA KFS YF EAP+F +PGR +PV++ YT +PE +Y+ A++ T++QIH +P GD
Sbjct: 570 SSATIDAEKFSAYFDEAPVFYVPGRRYPVDIYYTPQPEANYIQAAITTILQIHTTQPAGD 629
Query: 369 ILLFLTGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFEPAPPGSRXV 548
IL+FLTGQ+EI+ E + E + LG +PE+I+ P+Y+ LPSE+Q +IF+P PPG+R V
Sbjct: 630 ILVFLTGQDEIELMSENMQELCRILGKRIPEIILCPIYANLPSELQAKIFDPTPPGARKV 689
Query: 549 VIATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGMDSLGVTPIXAXGGETSRPAGRAA- 725
V+ATNIAETS+TIDG+ +V+D GFVKQ +YN +TGM+SL P + + AGRA
Sbjct: 690 VLATNIAETSITIDGVNFVIDSGFVKQNMYNPRTGMESLVSVPCSRASAD--QRAGRAGR 747
Query: 726 PGPGKCYRLYT 758
GPGKC+RLYT
Sbjct: 748 VGPGKCFRLYT 758
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 296 bits (727), Expect = 2e-81
Identities = 141/251 (56%), Positives = 194/251 (77%), Gaps = 1/251 (0%)
Frame = +3
Query: 9 TVIKYMTDGMLLRECLMDLDLKAYSVIMLDEAHXRTIHTDVLFGLLKQAVQKRPELKLIV 188
TVIKYMTDG+LLRE LM +L+ YSVI++DEAH R+++TD+L GLLK+ + +R ++KL+V
Sbjct: 583 TVIKYMTDGVLLRESLMQNNLEKYSVIIMDEAHERSLNTDILMGLLKKVLSRRRDIKLLV 642
Query: 189 TSATLDAVKFSQYFFEAPIFTIPGRTFPVEVLYTKEPETDYLDASLITVMQIHLREPPGD 368
TSAT+++ KFS +F AP FTIPGRT+PV++++ K P +DY++A++ V+QIHL +P GD
Sbjct: 643 TSATMNSQKFSDFFGGAPQFTIPGRTYPVDIMFAKAPCSDYVEAAVRQVLQIHLSQPAGD 702
Query: 369 ILLFLTGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFEPAPPGSRXV 548
IL+F+TGQE+I+ CEI+ +R+ L D P L ILP+YS +P+++Q +IF+ A PG R V
Sbjct: 703 ILVFMTGQEDIEATCEIIADRLNQL-HDAPRLSILPIYSQMPADLQAKIFDSAEPGVRKV 761
Query: 549 VIATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGMDSLGVTPIXAXGGETSRPAGRAA- 725
V+ATNIAETSLT+ GI YVVD G+ K K+YNSK G+D+L VTPI ++ AGRA
Sbjct: 762 VVATNIAETSLTVHGISYVVDTGYCKLKMYNSKLGIDTLQVTPISQ--ANANQRAGRAGR 819
Query: 726 PGPGKCYRLYT 758
GPG YRLYT
Sbjct: 820 TGPGIAYRLYT 830
>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
Prp43|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 287 bits (704), Expect = 1e-78
Identities = 145/258 (56%), Positives = 185/258 (71%), Gaps = 8/258 (3%)
Frame = +3
Query: 9 TVIKYMTDGMLLRECLMDLDLKAYSVIMLDEAHXRTIHTDVLFGLLKQAVQKRPELKLIV 188
T++KYMTDGMLLRE + D L YS I+LDEAH RT+ TD+L GL+K+ +RP+LK+IV
Sbjct: 168 TLLKYMTDGMLLREAMTDHMLSRYSCIILDEAHERTLATDILMGLMKRLATRRPDLKIIV 227
Query: 189 TSATLDAVKFSQYFFEAPIFTIPGRTFPVEVLYTKEPETDYLDASLITVMQIHLREPPGD 368
SATLDA KF +YFF+AP+ +PGRT+PVE+ YT+EPE DYL+A+L TV+QIH+ E PGD
Sbjct: 228 MSATLDAKKFQKYFFDAPLLAVPGRTYPVEIYYTQEPERDYLEAALRTVLQIHVEEGPGD 287
Query: 369 ILLFLTGQEEIDTACEILYERMKSLGPD--VPELIILPVYSALPSEMQTRIFEPAPPGS- 539
IL+FLTG+EEI+ AC + L + L + P+Y +LP Q RIFEP P +
Sbjct: 288 ILVFLTGEEEIEDACRKITLEADDLVREGAAGPLKVYPLYGSLPPNQQQRIFEPTPEDTK 347
Query: 540 ----RXVVIATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGMDSLGVTPIXAXGGETSR 707
R VVI+TNIAETSLTIDGI YVVDPGF KQK+YN + ++SL V+PI + +
Sbjct: 348 SGYGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKIYNPRIRVESLLVSPISKASAQ--Q 405
Query: 708 PAGRAA-PGPGKCYRLYT 758
AGRA PGKC+RLYT
Sbjct: 406 RAGRAGRTRPGKCFRLYT 423
>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
Prh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 719
Score = 250 bits (612), Expect = 2e-67
Identities = 125/255 (49%), Positives = 174/255 (68%), Gaps = 1/255 (0%)
Frame = +3
Query: 3 RXTVIKYMTDGMLLRECLMDLDLKAYSVIMLDEAHXRTIHTDVLFGLLKQAVQKRPELKL 182
+ T IKY+TDGMLLRE + D L Y ++LDEAH RT+ TD+L G +K+ ++KRP L++
Sbjct: 185 KKTRIKYLTDGMLLRELINDPILSQYHTLILDEAHERTLMTDMLLGFVKKIIKKRPALRV 244
Query: 183 IVTSATLDAVKFSQYFFEAPIFTIPGRTFPVEVLYTKEPETDYLDASLITVMQIHLREPP 362
I+ SATL+A +FS++F A I I GR +PV++ YT PE DYLDA L T+ Q+H + PP
Sbjct: 245 IIMSATLNAERFSEFFDGAEICYISGRQYPVQIHYTYTPEPDYLDACLRTIFQLHTKLPP 304
Query: 363 GDILLFLTGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFEPAPPGSR 542
GDIL+FLTGQ+EI+ ++ K L ++P++ P++++LP E Q ++F PA R
Sbjct: 305 GDILVFLTGQDEIEALEALIKSYSKQLPSNLPQIQACPLFASLPQEQQLQVFLPALANHR 364
Query: 543 XVVIATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGMDSLGVTPIXAXGG-ETSRPAGR 719
VV++TNIAETS+TI GI YV+D G K K +NSK G++SL V PI + S AGR
Sbjct: 365 KVVLSTNIAETSVTISGIRYVIDTGLAKIKQFNSKLGLESLTVQPISQSAAMQRSGRAGR 424
Query: 720 AAPGPGKCYRLYTGA 764
A G+CYR+YT A
Sbjct: 425 EA--AGQCYRIYTEA 437
>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 207 bits (506), Expect = 1e-54
Identities = 109/253 (43%), Positives = 163/253 (64%), Gaps = 3/253 (1%)
Frame = +3
Query: 9 TVIKYMTDGMLLRECLMDLDLKAYSVIMLDEAHXRTIHTDVLFGLLKQAVQKRPELKLIV 188
T IKYMTDG+LL E D L+ YS+++LDE H RT+ TD+L G+LK+ ++KR + +L++
Sbjct: 117 TKIKYMTDGILLNEIFFDPLLERYSIVILDEVHERTLSTDLLLGVLKRILEKRNDFRLVL 176
Query: 189 TSATLDAVKFSQYFFEAPIFT--IPGRTFPVEVLYTKEPETDYLDASLITVMQIHLREPP 362
+SA++DA K SQ+F + + T I G+ FPVE L+ ++P +Y+D+++ TV+ I+ PP
Sbjct: 177 SSASVDANKLSQFFGQDKVCTMSIEGKLFPVETLFLQKPTENYVDSAIETVININSTYPP 236
Query: 363 GDILLFLTGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFEPAPPGSR 542
GDIL+FL+G++EI+ + + + + D L+ LP+++ L + Q R+F R
Sbjct: 237 GDILVFLSGRKEIEYCIKKIEDSLIHASEDCQTLVPLPLHAGLTVDEQMRVFNIYDGDFR 296
Query: 543 XVVIATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGMDSLGVTPIXAXGG-ETSRPAGR 719
V+ +TNIAETS+TIDGI YVVD GF KQ++YN T L PI + S AGR
Sbjct: 297 KVIFSTNIAETSITIDGIVYVVDSGFNKQRIYNPYTRTSKLINVPISKSSAIQRSGRAGR 356
Query: 720 AAPGPGKCYRLYT 758
GK +RLYT
Sbjct: 357 TM--RGKVFRLYT 367
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 120 bits (288), Expect = 3e-28
Identities = 68/162 (41%), Positives = 97/162 (59%), Gaps = 15/162 (9%)
Frame = +3
Query: 9 TVIKYMTDGMLLRECLMDLDLKAYSVIMLDEAHXRTIHTDVLFGLLKQAVQKRPE----- 173
T IK+MTDG+LLRE D L AYS +++DEAH R+++TD+L GLL + V+ R E
Sbjct: 493 TAIKFMTDGILLRELSSDFLLTAYSAVIVDEAHERSVNTDILLGLLSRIVRLRREMSKSD 552
Query: 174 -----LKLIVTSATLDAVKFSQ----YFFEAPIFTIPGRTFPVEVLYTKEPETDYLDASL 326
LKLI+ SATL FS+ + PI I R +PV + + + + DYL +
Sbjct: 553 QKVKPLKLIIMSATLRVTDFSENKLLFSVPPPIIKIDARQYPVSIHFNRTTKPDYLQDAF 612
Query: 327 ITVMQIHLREPPGDILLFLTGQEEIDTACEILYER-MKSLGP 449
V IH R P G IL+FLTGQ+E++ C++L +R ++S P
Sbjct: 613 DKVCLIHKRLPAGSILVFLTGQQEVEQLCQMLRKRFVRSFRP 654
Score = 93.9 bits (223), Expect = 2e-20
Identities = 47/102 (46%), Positives = 65/102 (63%), Gaps = 1/102 (0%)
Frame = +3
Query: 462 LIILPVYSALPSEMQTRIFEPAPPGSRXVVIATNIAETSLTIDGIYYVVDPGFVKQKVYN 641
+ +LP+YS L +E Q ++F+ +P G R ++ATN+AETS+TI I YVVD G K++VYN
Sbjct: 702 MYVLPLYSLLTTEDQMKVFDSSPEGHRMCIVATNVAETSITIPNIRYVVDCGKAKERVYN 761
Query: 642 SKTGMDSLGVTPIXAXGGETSRPAGRAA-PGPGKCYRLYTGA 764
KT + V I + + AGRA GPG CYRLY+ A
Sbjct: 762 EKTSVQKFEVRWISKANAD--QRAGRAGRTGPGHCYRLYSSA 801
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 110 bits (265), Expect = 2e-25
Identities = 92/277 (33%), Positives = 137/277 (49%), Gaps = 25/277 (9%)
Frame = +3
Query: 3 RXTVIKYMTDGMLLRECLMD-LD-LKAYSVIMLDEAHXRTIHTDVLFGLLKQAVQKRPEL 176
+ T++++ T G+LLR L L S +++DE H R+I D+L LLK + + P L
Sbjct: 670 KETLLEFCTTGLLLRRIQQHGLGFLSTLSCVVVDEVHERSIENDILLTLLKLVISRIPNL 729
Query: 177 KLIVTSATLDAVKFSQYFFEAPIFTIPGRTFPVEVLY---------------------TK 293
K+I+ SAT+++ F YF A I GRTFP++ Y K
Sbjct: 730 KVILMSATVNSDTFKYYFGNAGHLHIHGRTFPIKDYYIEDFAPKLNEDDDEEDVPRRKKK 789
Query: 294 EPETDY-LDASLITVMQIHLREPPGDILLFLTGQEEIDTACEILYERMKSLGPDVPELII 470
E E DY L + L++ + L G IL+FL G I C +KS D + +
Sbjct: 790 EYEIDYHLISRLVSSIDAELGSSSGSILVFLPGVSNI-ARC---IREIKS--KDGSKFEV 843
Query: 471 LPVYSALPSEMQTRIFEPAPPGSRXVVIATNIAETSLTIDGIYYVVDPGFVKQKVYNSKT 650
LP++++L + Q R F+ R ++ ATNIAETS+TID + V+D G VKQ Y+ +
Sbjct: 844 LPLHASLNTSEQRRCFKTYT--KRKIICATNIAETSITIDDVVAVIDSGRVKQIDYDVER 901
Query: 651 GMDSLGVTPIXAXGGETSRPAGRAA-PGPGKCYRLYT 758
+ + T A + GRA G CY+LYT
Sbjct: 902 DLVTFKET--WASRAACQQRRGRAGRVKKGICYKLYT 936
>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1428
Score = 73.3 bits (172), Expect = 3e-14
Identities = 34/96 (35%), Positives = 61/96 (63%)
Frame = +3
Query: 9 TVIKYMTDGMLLRECLMDLDLKAYSVIMLDEAHXRTIHTDVLFGLLKQAVQKRPELKLIV 188
T + Y+T G LR + ++++ + +++DE H R+I +D+L + +++ P LK+I+
Sbjct: 729 TPLTYVTTGTFLRLLEVGNEIESVTHLIIDEVHERSIDSDLLLIHVLHLLKQHPHLKIII 788
Query: 189 TSATLDAVKFSQYFFEAPIFTIPGRTFPVEVLYTKE 296
SATL+A KF YF + + TIPG+T+PV Y ++
Sbjct: 789 MSATLNAEKFQLYFEGSNLITIPGKTYPVHRFYLED 824
Score = 61.3 bits (142), Expect = 1e-10
Identities = 47/137 (34%), Positives = 69/137 (50%), Gaps = 7/137 (5%)
Frame = +3
Query: 369 ILLFLTGQEEIDTACEILYERMKSLGPDVP------ELIILPVYSALPSEMQTRIFEPAP 530
+L+FL G EI R+KSL D+P + I ++S L S Q +F P
Sbjct: 906 VLVFLPGISEI--------LRVKSLIEDMPMFRNHRKFCIYMLHSTLSSAQQQSVFNIPP 957
Query: 531 PGSRXVVIATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGMDSLGVTPI-XAXGGETSR 707
G R +V++TNIAET +TI + V+D G ++ YNS+ + L T + A + S
Sbjct: 958 KGCRKIVLSTNIAETGVTIPDVTCVIDTGVHREMRYNSRRHLSRLTDTFVSKANAKQRSG 1017
Query: 708 PAGRAAPGPGKCYRLYT 758
AGR G CY L++
Sbjct: 1018 RAGRVQ--EGICYHLFS 1032
>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
Smb1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 147
Score = 28.7 bits (61), Expect = 0.98
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -1
Query: 739 LPGPGAARPAGRDVSPPXAXIGV 671
L GPG ARPAGR + A +G+
Sbjct: 95 LSGPGVARPAGRGIPLGQAPVGL 117
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 26.2 bits (55), Expect = 5.2
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -2
Query: 483 STPAELSAPARPAPRTSFSRTISHTPCQSLL 391
+ PA SAPA PAP + + + P S++
Sbjct: 1468 NAPAPSSAPAPPAPVSQLPPAVPNVPVPSMI 1498
>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 26.2 bits (55), Expect = 5.2
Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 1/100 (1%)
Frame = -1
Query: 463 SSGTSGPKDFILSYNISHAVSIS-SWPVRNSRISPGGSLRWICMTVISEASK*SVSGSLV 287
SS +S +S +I+ ++S S S V +S S GS+ +S +S ++SG
Sbjct: 156 SSSSSSSSSTPISSSITSSISSSASSSVSSSSASSSGSISSADAKTVSASSNSTISGFST 215
Query: 286 YKTSTGKVRPGMVKIGASKKYCENLTASSVADVTMSLSSG 167
TS G + Y ++ VA ++++ G
Sbjct: 216 STTSASSSAAGNSSSSSYTSY-SGAVSNGVAQLSVAACMG 254
>SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 589
Score = 25.4 bits (53), Expect = 9.1
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +3
Query: 558 TNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGMDSLGV 671
+N +T+ G Y + P VKQ Y +K + SLG+
Sbjct: 460 SNRTNKRVTMVGTPYWMAPEVVKQNEYGTKVDIWSLGI 497
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 9.1
Identities = 43/176 (24%), Positives = 70/176 (39%), Gaps = 1/176 (0%)
Frame = -1
Query: 616 PGSTT*YIPSMVSDVSAMLVAITTFLEPGGAGSKIRVCISDGSAEYTGRIISSGTSGPKD 437
P ST+ + P+ S+ + ++ L+P S I S S E + ISS + D
Sbjct: 115 PSSTSFFSPTS-SEYTPSSTESSSLLDPSSVSSAILP--SSTSVEVS---ISSSSLSSSD 168
Query: 436 FILSYNISHAVSISSWPVRNSRISPGGSLRWICMTVISEASK*SVSGSLVYKTSTGKVRP 257
+ S S S +S +S S + S +S S S+V +S+
Sbjct: 169 PLTSSTFSSLSSSTS--SSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSS 226
Query: 256 GMVKIGASKKYCE-NLTASSVADVTMSLSSGRFCTACFSRPNSTSVWMVRSCASSS 92
+S T+SS + + SLSS + S +S+S+ S +SSS
Sbjct: 227 SSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSS 282
>SPBC32F12.02 |rec14||recombination protein
Rec14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 302
Score = 25.4 bits (53), Expect = 9.1
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = -1
Query: 475 GRIISSGTSGPKDFILSYN---ISHAVSISSWPVRNSRISPGGSL 350
GR I SG + F++S + H +S + PVR+ SPG +L
Sbjct: 157 GRFIVSGHQTGQLFLISTETGRLFHVLSGHTSPVRSVAFSPGSTL 201
>SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 312
Score = 25.4 bits (53), Expect = 9.1
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +3
Query: 591 GIYYVVDPGFVKQKVYNSKTGMDSLGVTPIXAXGGE 698
G + + P VKQ YN K + SLG+T GE
Sbjct: 164 GTPFWMAPEVVKQTGYNYKADIWSLGITAYELATGE 199
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 25.4 bits (53), Expect = 9.1
Identities = 19/71 (26%), Positives = 33/71 (46%)
Frame = -1
Query: 487 AEYTGRIISSGTSGPKDFILSYNISHAVSISSWPVRNSRISPGGSLRWICMTVISEASK* 308
+++ G+ + + DF SY ++ S + P+RN P GSL + + S +
Sbjct: 25 SDFLGKSLKNNNDDYSDFRGSY-LNDKSSFQT-PLRNGSYQPKGSLEFTPLLQSSNKNSD 82
Query: 307 SVSGSLVYKTS 275
+GSL K S
Sbjct: 83 KYNGSLGDKGS 93
>SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 25.4 bits (53), Expect = 9.1
Identities = 12/51 (23%), Positives = 25/51 (49%)
Frame = -3
Query: 173 FGALLHGLLQQTEQHVGVDGAXVRLVKHDHRVRLQVQVHEALAEQHAVRHV 21
FGAL G+ +HV ++ + R+R+ ++ E +A + + H+
Sbjct: 149 FGALAFGIGTSEVEHVLATQTILQRKSKNMRIRVNGKLPEGIASKDLILHI 199
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 25.4 bits (53), Expect = 9.1
Identities = 22/73 (30%), Positives = 35/73 (47%)
Frame = -1
Query: 307 SVSGSLVYKTSTGKVRPGMVKIGASKKYCENLTASSVADVTMSLSSGRFCTACFSRPNST 128
SV S T++G + G V + +++ TAS + V LSS T+ FS +S
Sbjct: 3590 SVFNSTTVSTASG-ISQGSV-LSSTRAIESESTASHRSSVLSELSSYDLSTSAFSSSSSE 3647
Query: 127 SVWMVRSCASSSM 89
+ S +SSS+
Sbjct: 3648 PSTLDYSVSSSSL 3660
>SPBC19C2.11c |||mitochondrial outer membrane protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 25.4 bits (53), Expect = 9.1
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +3
Query: 441 LGPDVPELIILPVYSALPSEMQTRIFEPAPPGSRXVVIATNIAETSLTI 587
LGP P+L IL V P Q +F G +V+ T I L++
Sbjct: 48 LGPQPPQLEILEVGDLAPDRFQ-GLFNLHYSGDASLVLQTKIRANPLSV 95
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,832,324
Number of Sequences: 5004
Number of extensions: 58030
Number of successful extensions: 227
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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