Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0153
         (775 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    25   1.0  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    24   1.8  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   3.2  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   7.3  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +3

Query: 405 TACEILYERMKSLGPDV-PELIILPVYSAL 491
           TAC  LYER++  GP +   LI+L + + +
Sbjct: 49  TACAALYERVEWSGPWILVTLIVLAIVNVM 78


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
 Frame = -3

Query: 506 LHLGRQRRVHRQNYQLRHVRPQGLHSLVQYLTR----RVNLFLASEEQQDIPRGLPQVDL 339
           LH GR  R+ R    L  VR   L  LV+Y+++     + L+   E   +     PQ D 
Sbjct: 199 LHAGRALRILRLAKLLSLVRLLRLSRLVRYVSQWEEVYIPLYQQPERHYERRATPPQPDR 258

Query: 338 HDRDQ 324
             +DQ
Sbjct: 259 TSKDQ 263


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -3

Query: 506 LHLGRQRRVHRQNYQLRHVRPQGLHSLVQYLTRRVNLFLASEEQQ 372
           LH GR  R+ R    L  VR   L  LV+Y+++   +++    Q+
Sbjct: 199 LHAGRALRILRLAKLLSLVRLLRLSRLVRYVSQWEEVYILQNLQK 243


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 506 LHLGRQRRVHRQNYQLRHVRPQGLHSLVQYLTR 408
           LH GR  R+ R    L  VR   L  LV+Y+++
Sbjct: 199 LHAGRALRILRLAKLLSLVRLLRLSRLVRYVSQ 231


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,051
Number of Sequences: 438
Number of extensions: 4280
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)