Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0153
(775 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g26560.1 68416.m03315 ATP-dependent RNA helicase, putative si... 390 e-109
At1g32490.1 68414.m04009 RNA helicase, putative similar to ATP-d... 330 6e-91
At2g35340.1 68415.m04333 RNA helicase, putative similar to ATP-d... 316 1e-86
At2g47250.1 68415.m05900 RNA helicase, putative similar to SP|P5... 300 6e-82
At3g62310.1 68416.m07000 RNA helicase, putative similar to SP|P5... 299 1e-81
At5g13010.1 68418.m01491 RNA helicase, putative similar to DEAH-... 297 5e-81
At4g16680.1 68417.m02519 RNA helicase, putative similar to SP|Q1... 295 2e-80
At1g26370.1 68414.m03217 RNA helicase, putative similar to SP|Q1... 216 4e-71
At1g27900.1 68414.m03419 RNA helicase, putative similar to SP|Q1... 254 4e-68
At4g18465.1 68417.m02740 RNA helicase, putative similar to SP|Q1... 226 1e-59
At5g10370.1 68418.m01203 helicase domain-containing protein / IB... 183 1e-46
At4g01020.1 68417.m00137 helicase domain-containing protein / IB... 176 1e-44
At1g33390.1 68414.m04133 helicase domain-containing protein simi... 103 1e-22
At2g35920.1 68415.m04409 helicase domain-containing protein simi... 88 7e-18
At1g48650.1 68414.m05445 helicase domain-containing protein cont... 85 4e-17
At1g58060.1 68414.m06580 helicase domain-containing protein cont... 85 6e-17
At2g30800.1 68415.m03755 DEIH-box RNA/DNA helicase, putative sim... 82 5e-16
At2g01130.1 68415.m00021 helicase domain-containing protein simi... 81 8e-16
At1g06670.1 68414.m00707 DEIH-box RNA/DNA helicase identical to ... 81 8e-16
At1g58050.1 68414.m06579 helicase domain-containing protein cont... 78 7e-15
At5g04895.1 68418.m00514 helicase domain-containing protein simi... 60 1e-09
At2g47680.1 68415.m05955 zinc finger (CCCH type) helicase family... 58 5e-09
At4g25620.1 68417.m03690 hydroxyproline-rich glycoprotein family... 30 2.0
At5g32590.1 68418.m03867 myosin heavy chain-related similar to M... 29 2.6
At5g06400.1 68418.m00716 pentatricopeptide (PPR) repeat-containi... 29 2.6
At4g15236.1 68417.m02335 ABC transporter family protein similar ... 29 2.6
At5g55680.1 68418.m06942 glycine-rich protein 29 4.5
At5g41620.1 68418.m05057 expressed protein weak similarity to mi... 28 6.0
At4g21990.1 68417.m03183 5'-adenylylsulfate reductase (APR3) / P... 28 6.0
At4g15233.1 68417.m02334 ABC transporter family protein similar ... 28 6.0
At1g17450.1 68414.m02137 ATP phosphoribosyltransferase -related ... 28 6.0
At4g02010.1 68417.m00271 protein kinase family protein contains ... 28 7.9
At2g43440.1 68415.m05399 F-box family protein contains Pfam PF00... 28 7.9
At2g35350.1 68415.m04334 protein phosphatase 2C family protein /... 28 7.9
At2g21680.1 68415.m02579 kelch repeat-containing F-box family pr... 28 7.9
At1g70100.3 68414.m08067 expressed protein 28 7.9
At1g70100.2 68414.m08066 expressed protein 28 7.9
At1g70100.1 68414.m08065 expressed protein 28 7.9
>At3g26560.1 68416.m03315 ATP-dependent RNA helicase, putative similar
to SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase
HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain, PF00575:
S1 RNA binding domain
Length = 1168
Score = 390 bits (961), Expect = e-109
Identities = 190/251 (75%), Positives = 213/251 (84%), Gaps = 1/251 (0%)
Frame = +3
Query: 9 TVIKYMTDGMLLRECLMDLDLKAYSVIMLDEAHXRTIHTDVLFGLLKQAVQKRPELKLIV 188
TVIKYMTDGMLLRE L+D +L YSVIMLDEAH RTIHTDVLFGLLK+ +++R +L+LIV
Sbjct: 606 TVIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTIHTDVLFGLLKKLMKRRLDLRLIV 665
Query: 189 TSATLDAVKFSQYFFEAPIFTIPGRTFPVEVLYTKEPETDYLDASLITVMQIHLREPPGD 368
TSATLDA KFS YFF IFTIPGRTFPVE+LYTK+PETDYLDA+LITV+QIHL EP GD
Sbjct: 666 TSATLDAEKFSGYFFNCNIFTIPGRTFPVEILYTKQPETDYLDAALITVLQIHLTEPEGD 725
Query: 369 ILLFLTGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFEPAPPGSRXV 548
IL+FLTGQEEID+AC+ LYERMK LG +VPELIILPVYSALPSEMQ+RIF+P PPG R V
Sbjct: 726 ILVFLTGQEEIDSACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPPPPGKRKV 785
Query: 549 VIATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGMDSLGVTPIXAXGGETSRPAGRAA- 725
V+ATNIAE SLTIDGIYYVVDPGF KQ VYN K G++SL +TPI + AGRA
Sbjct: 786 VVATNIAEASLTIDGIYYVVDPGFAKQNVYNPKQGLESLVITPISQ--ASAKQRAGRAGR 843
Query: 726 PGPGKCYRLYT 758
GPGKCYRLYT
Sbjct: 844 TGPGKCYRLYT 854
>At1g32490.1 68414.m04009 RNA helicase, putative similar to
ATP-dependent RNA helicase #3 [Homo sapiens] GI:3107913;
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain
Length = 1044
Score = 330 bits (811), Expect = 6e-91
Identities = 158/251 (62%), Positives = 198/251 (78%), Gaps = 1/251 (0%)
Frame = +3
Query: 9 TVIKYMTDGMLLRECLMDLDLKAYSVIMLDEAHXRTIHTDVLFGLLKQAVQKRPELKLIV 188
TV+KYMTDGMLLRE L + DL +YSV+++DEAH RT+ TD+LFGL+K + RP+LKL++
Sbjct: 495 TVLKYMTDGMLLRELLGEPDLASYSVVIVDEAHERTLSTDILFGLVKDIARFRPDLKLLI 554
Query: 189 TSATLDAVKFSQYFFEAPIFTIPGRTFPVEVLYTKEPETDYLDASLITVMQIHLREPPGD 368
+SAT+DA KFS YF APIF+ PGR +PVE+ YT PE DY+DA+++T++ IH+REP GD
Sbjct: 555 SSATMDAEKFSDYFDTAPIFSFPGRRYPVEINYTSAPEADYMDAAIVTILTIHVREPLGD 614
Query: 369 ILLFLTGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFEPAPPGSRXV 548
IL+F TGQEEI+TA EIL R++ LG + ELII P+Y+ LPSE+Q +IFEP P G+R V
Sbjct: 615 ILVFFTGQEEIETAEEILKHRIRGLGTKIRELIICPIYANLPSELQAKIFEPTPEGARKV 674
Query: 549 VIATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGMDSLGVTPIXAXGGETSRPAGRAA- 725
V+ATNIAETSLTIDGI YVVDPGF K K YN +TGM+SL +TPI + T R AGRA
Sbjct: 675 VLATNIAETSLTIDGIKYVVDPGFSKMKSYNPRTGMESLLITPI-SKASATQR-AGRAGR 732
Query: 726 PGPGKCYRLYT 758
PGKCYRLYT
Sbjct: 733 TSPGKCYRLYT 743
>At2g35340.1 68415.m04333 RNA helicase, putative similar to
ATP-dependent RNA helicase #3 [Homo sapiens] GI:3107913;
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain
Length = 1110
Score = 316 bits (775), Expect = 1e-86
Identities = 147/250 (58%), Positives = 190/250 (76%)
Frame = +3
Query: 9 TVIKYMTDGMLLRECLMDLDLKAYSVIMLDEAHXRTIHTDVLFGLLKQAVQKRPELKLIV 188
T++KYMTDGMLLRE L + DL +YSVI++DEAH RT+ TD+LFGL+K + RP+LKL++
Sbjct: 561 TILKYMTDGMLLRELLGEPDLGSYSVIIVDEAHERTLRTDILFGLVKDIARARPDLKLLI 620
Query: 189 TSATLDAVKFSQYFFEAPIFTIPGRTFPVEVLYTKEPETDYLDASLITVMQIHLREPPGD 368
+SAT+DA KFS +F +APIF PGR +PV++ +T PE DY+DA++ TV+ IH++EP GD
Sbjct: 621 SSATMDAEKFSDFFDQAPIFRFPGRRYPVDICFTTAPEADYMDAAITTVLTIHVKEPLGD 680
Query: 369 ILLFLTGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFEPAPPGSRXV 548
+L+FL GQEEI+ E L +++ LG + ELII P+Y+ LPSE+Q +IFEP P G+R V
Sbjct: 681 VLVFLPGQEEIEAVEENLKHKIRGLGTKIRELIICPIYANLPSELQAKIFEPTPEGARKV 740
Query: 549 VIATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGMDSLGVTPIXAXGGETSRPAGRAAP 728
V+ATNIAETSLTIDGI YVVDPGF K K YN +TGM+SL VTPI + T R
Sbjct: 741 VLATNIAETSLTIDGIKYVVDPGFSKMKSYNPRTGMESLLVTPI-SKASATQRTGRAGRT 799
Query: 729 GPGKCYRLYT 758
PGKCYRLYT
Sbjct: 800 SPGKCYRLYT 809
>At2g47250.1 68415.m05900 RNA helicase, putative similar to
SP|P53131 Pre-mRNA splicing factor RNA helicase PRP43
(Helicase JA1) {Saccharomyces cerevisiae}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 729
Score = 300 bits (737), Expect = 6e-82
Identities = 147/261 (56%), Positives = 193/261 (73%), Gaps = 8/261 (3%)
Frame = +3
Query: 9 TVIKYMTDGMLLRECLMDLDLKAYSVIMLDEAHXRTIHTDVLFGLLKQAVQKRPELKLIV 188
T++KY+TDGMLLRE + D L+ Y VI+LDEAH RT+ TDVLFGLLK+ ++ RP+LKL+V
Sbjct: 162 TMLKYLTDGMLLREAMADPLLERYKVIILDEAHERTLATDVLFGLLKEVLRNRPDLKLVV 221
Query: 189 TSATLDAVKFSQYFFEAPIFTIPGRTFPVEVLYTKEPETDYLDASLITVMQIHLREPPGD 368
SATL+A KF +YF AP+ +PGR PVE+ YT+EPE DYL+A++ TV+QIH+ EPPGD
Sbjct: 222 MSATLEAEKFQEYFSGAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPPGD 281
Query: 369 ILLFLTGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFEPAP------ 530
IL+FLTG+EEI+ AC + + + +LG V + ++P+YS LP MQ +IF+PAP
Sbjct: 282 ILVFLTGEEEIEDACRKINKEVSNLGDQVGPVKVVPLYSTLPPAMQQKIFDPAPVPLTEG 341
Query: 531 -PGSRXVVIATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGMDSLGVTPI-XAXGGETS 704
P R +V++TNIAETSLTIDGI YV+DPGF KQKVYN + ++SL V+PI A + S
Sbjct: 342 GPAGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRIRVESLLVSPISKASAHQRS 401
Query: 705 RPAGRAAPGPGKCYRLYTGAS 767
AGR PGKC+RLYT S
Sbjct: 402 GRAGRTR--PGKCFRLYTEKS 420
>At3g62310.1 68416.m07000 RNA helicase, putative similar to
SP|P53131 Pre-mRNA splicing factor RNA helicase PRP43
(Helicase JA1) {Saccharomyces cerevisiae}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 726
Score = 299 bits (735), Expect = 1e-81
Identities = 148/261 (56%), Positives = 192/261 (73%), Gaps = 8/261 (3%)
Frame = +3
Query: 9 TVIKYMTDGMLLRECLMDLDLKAYSVIMLDEAHXRTIHTDVLFGLLKQAVQKRPELKLIV 188
TV+KY+TDGMLLRE + D L+ Y VI+LDEAH RT+ TDVLFGLLK+ ++ RP+LKL+V
Sbjct: 158 TVLKYLTDGMLLREAMADPLLERYKVIILDEAHERTLATDVLFGLLKEVLKNRPDLKLVV 217
Query: 189 TSATLDAVKFSQYFFEAPIFTIPGRTFPVEVLYTKEPETDYLDASLITVMQIHLREPPGD 368
SATL+A KF YF AP+ +PGR PVE+ YT+EPE DYL+A++ TV+QIH+ EPPGD
Sbjct: 218 MSATLEAEKFQDYFSGAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPPGD 277
Query: 369 ILLFLTGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFEPAP------ 530
IL+FLTG+EEI+ AC + + + +LG V + ++P+YS LP MQ +IF+PAP
Sbjct: 278 ILVFLTGEEEIEDACRKINKEVGNLGDQVGPIKVVPLYSTLPPAMQQKIFDPAPEPVTEG 337
Query: 531 -PGSRXVVIATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGMDSLGVTPI-XAXGGETS 704
P R +V++TNIAETSLTIDGI YV+DPGF KQKVYN + ++SL V+PI A + S
Sbjct: 338 GPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRIRVESLLVSPISKASAHQRS 397
Query: 705 RPAGRAAPGPGKCYRLYTGAS 767
AGR PGKC+RLYT S
Sbjct: 398 GRAGRTR--PGKCFRLYTEKS 416
>At5g13010.1 68418.m01491 RNA helicase, putative similar to DEAH-box
RNA helicase [Chlamydomonas reinhardtii] GI:12044832;
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain
Length = 1226
Score = 297 bits (729), Expect = 5e-81
Identities = 143/255 (56%), Positives = 188/255 (73%), Gaps = 5/255 (1%)
Frame = +3
Query: 9 TVIKYMTDGMLLRECLMDLDLKAYSVIMLDEAHXRTIHTDVLFGLLKQAVQKRPELKLIV 188
TVIKYMTDG+LLRE L D DL Y V+++DEAH R+++TDVLFG+LK+ V +R + KLIV
Sbjct: 620 TVIKYMTDGVLLRETLKDSDLDKYRVVVMDEAHERSLNTDVLFGILKKVVARRRDFKLIV 679
Query: 189 TSATLDAVKFSQYFFEAPIFTIPGRTFPVEVLYTKEPETDYLDASLITVMQIHLREPPGD 368
TSATL+A KFS +F PIF IPGRTFPV +LY+K P DY++A++ M IH+ PPGD
Sbjct: 680 TSATLNAQKFSNFFGSVPIFNIPGRTFPVNILYSKTPCEDYVEAAVKQAMTIHITSPPGD 739
Query: 369 ILLFLTGQEEIDTACEILYERMKSL----GPDVPELIILPVYSALPSEMQTRIFEPAPPG 536
IL+F+TGQ+EI+ AC L ERM+ L ++ L+ILP+YS LP+++Q +IF+ G
Sbjct: 740 ILIFMTGQDEIEAACFSLKERMEQLVSSSSREITNLLILPIYSQLPADLQAKIFQKPEDG 799
Query: 537 SRXVVIATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGMDSLGVTPIXAXGGETSRPAG 716
+R ++ATNIAETSLT+DGIYYV+D G+ K KV+N + GMD+L V PI + + AG
Sbjct: 800 ARKCIVATNIAETSLTVDGIYYVIDTGYGKMKVFNPRMGMDALQVFPISRAASD--QRAG 857
Query: 717 RAA-PGPGKCYRLYT 758
RA GPG CYRLYT
Sbjct: 858 RAGRTGPGTCYRLYT 872
>At4g16680.1 68417.m02519 RNA helicase, putative similar to SP|Q14562
ATP-dependent helicase DDX8 (RNA helicase HRH1) (DEAH-box
protein 8) {Homo sapiens}; contains Pfam profiles
PF04408: Helicase associated domain (HA2), PF00271:
Helicase conserved C-terminal domain
Length = 883
Score = 295 bits (724), Expect = 2e-80
Identities = 146/250 (58%), Positives = 186/250 (74%), Gaps = 1/250 (0%)
Frame = +3
Query: 9 TVIKYMTDGMLLRECLMDLDLKAYSVIMLDEAHXRTIHTDVLFGLLKQAVQKRPELKLIV 188
TVIKYMTDGMLLRE L++ L +YSVI++DEAH RT+ TD+LF L+K + RP+L+LI+
Sbjct: 313 TVIKYMTDGMLLRELLIEPKLDSYSVIIIDEAHERTLSTDILFALVKDVAKVRPDLRLII 372
Query: 189 TSATLDAVKFSQYFFEAPIFTIPGRTFPVEVLYTKEPETDYLDASLITVMQIHLREPPGD 368
+SATL+A KFS+YF A I+ IPGR +PVE L+ K PE DYL+ + TV+QIH E GD
Sbjct: 373 SSATLEAKKFSEYFDSARIYLIPGRRYPVEKLFRKCPEPDYLETVIRTVVQIHQTEAIGD 432
Query: 369 ILLFLTGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFEPAPPGSRXV 548
IL+FLTGQEEI+T L RM LG E+II P+YS LP+ +Q ++FEPAP G+R V
Sbjct: 433 ILVFLTGQEEIETVETNLKRRMMDLGTKGSEIIICPIYSNLPTPLQAKVFEPAPKGTRKV 492
Query: 549 VIATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGMDSLGVTPIXAXGGETSRPAGRAA- 725
V+ATNIAETSLTIDG+ YV+DPG+ K YN +TGM+SL VTPI ++ AGR+
Sbjct: 493 VLATNIAETSLTIDGVKYVIDPGYCKINSYNPRTGMESLLVTPISK--ASAAQRAGRSGR 550
Query: 726 PGPGKCYRLY 755
GPGKC+RLY
Sbjct: 551 TGPGKCFRLY 560
>At1g26370.1 68414.m03217 RNA helicase, putative similar to
SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase
HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 717
Score = 216 bits (527), Expect(2) = 4e-71
Identities = 105/200 (52%), Positives = 144/200 (72%), Gaps = 1/200 (0%)
Frame = +3
Query: 159 QKRPELKLIVTSATLDAVKFSQYFFEAPIFTIPGRTFPVEVLYTKEPETDYLDASLITVM 338
+K LKLI+ SA+LDA FS+YF A + GR FPV++LYT PE+DY+DA+L+T+
Sbjct: 224 RKLSPLKLIIMSASLDARVFSEYFGGAKAVHVQGRQFPVDILYTVHPESDYVDATLVTIF 283
Query: 339 QIHLREPPGDILLFLTGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIF 518
QIH E PGDIL+FLTGQ+EI++ ++ ER++++ D +L+ L ++SALPSE Q ++F
Sbjct: 284 QIHFEEKPGDILVFLTGQDEIESVERLVQERLQNIPEDKRKLLPLAIFSALPSEQQMKVF 343
Query: 519 EPAPPGSRXVVIATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGMDSLGVTPIXAXGGE 698
PAP G R V++ATNIAETS+TI GI YV+DPGFVK + Y+ GM+SL V P A +
Sbjct: 344 APAPTGFRKVILATNIAETSITIPGIRYVIDPGFVKARSYDPSKGMESLDVVP--ASKAQ 401
Query: 699 TSRPAGRAA-PGPGKCYRLY 755
T + +GRA GPGK +RLY
Sbjct: 402 TLQRSGRAGREGPGKSFRLY 421
Score = 70.5 bits (165), Expect(2) = 4e-71
Identities = 32/55 (58%), Positives = 42/55 (76%)
Frame = +3
Query: 9 TVIKYMTDGMLLRECLMDLDLKAYSVIMLDEAHXRTIHTDVLFGLLKQAVQKRPE 173
T +KYMTDG+LLRE L+D L YSVI++DEAH R++HTDVL LLK+ + R +
Sbjct: 133 TRLKYMTDGLLLREALLDPHLSRYSVIIVDEAHDRSVHTDVLLALLKKIQRTRSQ 187
>At1g27900.1 68414.m03419 RNA helicase, putative similar to
SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase
HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 700
Score = 254 bits (623), Expect = 4e-68
Identities = 124/252 (49%), Positives = 176/252 (69%), Gaps = 3/252 (1%)
Frame = +3
Query: 9 TVIKYMTDGMLLRECLMDLDLKAYSVIMLDEAHXRTIHTDVLFGLLKQAVQKRPE-LKLI 185
T IKY+TDG+LLRE L + L YSVI+LDEAH R+++TD+L GL+K+ V+ R K++
Sbjct: 95 TRIKYLTDGVLLRESLSNPMLDDYSVIILDEAHERSLNTDILLGLVKRLVRIRASNFKVL 154
Query: 186 VTSATLDAVKFSQYFFEAPIFTIPGRTFPVEVLYTKEPETDYLDASLITVMQIHLREPPG 365
+TSATLD K S++F P+ +PG+ +PVE+LY+KE Y+++SL + IH+REP G
Sbjct: 155 ITSATLDGEKVSEFFSGCPVLNVPGKLYPVEILYSKERPVSYIESSLKVAIDIHVREPEG 214
Query: 366 DILLFLTGQEEIDTACEILYERMKSLGP-DVPELIILPVYSALPSEMQTRIFEPAPPGSR 542
DIL+F+TGQ++I+ L E+++SL + II P++ +LP EMQ R+F P PP R
Sbjct: 215 DILIFMTGQDDIEKLVSRLEEKVRSLAEGSCMDAIIYPLHGSLPPEMQVRVFSPPPPNCR 274
Query: 543 XVVIATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGMDSLGVTPIXAXGGETSRPAGRA 722
+++TNIAETSLT+DG+ YV+D G+VKQ+ YN +GM SL V I + ++ AGRA
Sbjct: 275 RFIVSTNIAETSLTVDGVVYVIDSGYVKQRQYNPSSGMFSLDVIQISKV--QANQRAGRA 332
Query: 723 A-PGPGKCYRLY 755
PGKCYRLY
Sbjct: 333 GRTRPGKCYRLY 344
>At4g18465.1 68417.m02740 RNA helicase, putative similar to
SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase
HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 704
Score = 226 bits (552), Expect = 1e-59
Identities = 126/277 (45%), Positives = 175/277 (63%), Gaps = 27/277 (9%)
Frame = +3
Query: 9 TVIKYMTDGMLLRECLMDLDLKAYSVIMLDEAHXRTIHTDVLFGLLKQAVQ--------- 161
T +K++TDG+L+RE + D L YSVIM+DEAH R+I TD+L GLLK+ Q
Sbjct: 141 TSVKFLTDGVLIREMMEDPLLTKYSVIMIDEAHERSISTDILLGLLKKVSQSNTVLIIQR 200
Query: 162 KRPELKLIVTSATLDAVKFSQYF-----------------FEAPIFTIPGRTFPVEVLYT 290
+RPEL+LI++SAT++A S +F E I ++ GR F V++ Y
Sbjct: 201 RRPELRLIISSATIEAKTMSNFFNSSKKRHAPEGSTPGPKLEPAILSVEGRGFSVKIHYV 260
Query: 291 KEPETDYLDASLITVMQIHLREPPGDILLFLTGQEEIDTACEILYERMKSLGPDVPELII 470
+EP +DY+ + + T++ I+ REPPGD+L+FLTGQE+I+TA ++L E S + L+
Sbjct: 261 EEPVSDYIRSVVSTILLINEREPPGDVLVFLTGQEDIETAIKLLEEEAHSNQKNSSGLLP 320
Query: 471 LPVYSALPSEMQTRIFEPAPPGSRXVVIATNIAETSLTIDGIYYVVDPGFVKQKVYNSKT 650
LP+YS L Q IF P P G R V+++TNIAETSLT++G+ YV+D GF KQK YN +
Sbjct: 321 LPLYSGLSRSEQELIFTPTPRGKRKVILSTNIAETSLTLEGVVYVIDSGFSKQKFYNPIS 380
Query: 651 GMDSLGVTPI-XAXGGETSRPAGRAAPGPGKCYRLYT 758
++SL V PI A + S AGR PGKCYRLYT
Sbjct: 381 DIESLVVAPISKASARQRSGRAGRVR--PGKCYRLYT 415
>At5g10370.1 68418.m01203 helicase domain-containing protein / IBR
domain-containing protein / zinc finger protein-related
similar to RNA-dependent ATPase/helicase Cdc28p
[Schizosaccharomyces pombe] GI:1439562; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain, weak hit
to PF00097: Zinc finger, C3HC4 type (RING finger),
PF01485: IBR domain
Length = 1775
Score = 183 bits (445), Expect = 1e-46
Identities = 106/258 (41%), Positives = 147/258 (56%), Gaps = 10/258 (3%)
Frame = +3
Query: 15 IKYMTDGMLLRECLMDLDLKAYSVIMLDEAHXRTIHTDVLFGLLKQAVQKRPELKLIVTS 194
+ YMTD LL+ + D L S +++DEAH R+++TD+L LLK+ + +R +L+L++ S
Sbjct: 400 VVYMTDNCLLQHYMKDRSLSGISCVIIDEAHERSLNTDLLLALLKKLLSRRIDLRLVIMS 459
Query: 195 ATLDAVKFSQYFFEAPIFTIPGRTFPVEVLY----TKEPE-----TDYLDASLITVMQIH 347
AT DA + SQYFF I + GR FPVE++Y T+E Y+ + ++IH
Sbjct: 460 ATADAKQLSQYFFSCGILLVNGRNFPVEIVYSPSDTEENSVVGGIASYVGDVVKMAVEIH 519
Query: 348 LREPPGDILLFLTGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFEPA 527
E G IL FLT Q E++ ACE P I LP++ L E Q R+F+
Sbjct: 520 KTEKEGTILAFLTSQAEVEWACERFI---------TPSAIALPLHGKLSFEEQFRVFQ-N 569
Query: 528 PPGSRXVVIATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGMDSLGVTPIXAXGGETSR 707
PG R V+ ATNIAETSLTI G+ YV+D G VK+ Y +TGM L V + +
Sbjct: 570 HPGRRKVIFATNIAETSLTIPGVKYVIDSGMVKESKYEPRTGMSILKVCRVSQ--SSARQ 627
Query: 708 PAGRAA-PGPGKCYRLYT 758
AGRA PG+CYRLY+
Sbjct: 628 RAGRAGRTEPGRCYRLYS 645
>At4g01020.1 68417.m00137 helicase domain-containing protein / IBR
domain-containing protein / zinc finger protein-related
similar to SP|Q14562 ATP-dependent helicase DDX8 (RNA
helicase HRH1) (DEAH-box protein 8) {Homo sapiens};
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger),
PF01485: IBR domain
Length = 1787
Score = 176 bits (429), Expect = 1e-44
Identities = 103/258 (39%), Positives = 145/258 (56%), Gaps = 10/258 (3%)
Frame = +3
Query: 15 IKYMTDGMLLRECLMDLDLKAYSVIMLDEAHXRTIHTDVLFGLLKQAVQKRPELKLIVTS 194
+ YMTD LL+ + D L S +++DEAH R+++TD+L LL++ + +R +L+L++ S
Sbjct: 397 VVYMTDNCLLQHYMKDRSLSGISCVIIDEAHERSLNTDLLLALLRKLLSRRIDLRLVIMS 456
Query: 195 ATLDAVKFSQYFFEAPIFTIPGRTFPVEVLY----TKEPE-----TDYLDASLITVMQIH 347
AT DA + SQY F+ I + GR FPVE++Y T+E Y + ++IH
Sbjct: 457 ATADANQLSQYLFDCGILHVNGRNFPVEIVYSPSGTEENSVVGRIASYAGDVVKMAVEIH 516
Query: 348 LREPPGDILLFLTGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFEPA 527
E G IL FLT Q E++ ACE P I LP++ L E Q +F+
Sbjct: 517 KTEKEGTILAFLTSQAEVEWACERFV---------APSAIALPLHGKLSFEEQFMVFQNY 567
Query: 528 PPGSRXVVIATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGMDSLGVTPIXAXGGETSR 707
PG R V+ ATNIAETSLTI G+ YV+D G VK+ Y +TGM L V + +
Sbjct: 568 -PGRRKVIFATNIAETSLTIPGVKYVIDSGMVKESKYEPRTGMSILKVCQVSQ--SSARQ 624
Query: 708 PAGRAA-PGPGKCYRLYT 758
AGRA PG+CYRLY+
Sbjct: 625 RAGRAGRTEPGRCYRLYS 642
>At1g33390.1 68414.m04133 helicase domain-containing protein similar
to kurz protein [Drosophila melanogaster] GI:5869803;
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain
Length = 1237
Score = 103 bits (247), Expect = 1e-22
Identities = 68/171 (39%), Positives = 96/171 (56%), Gaps = 28/171 (16%)
Frame = +3
Query: 15 IKYMTDGMLLRECLMDLDLKAYSVIMLDEAHXRTIHTDVLFGLLKQAVQKRPE------- 173
IK+MTDG+LLRE D L+ YSVI+LDEAH R+++TD+L G+L + ++ R E
Sbjct: 340 IKFMTDGILLREIQNDFLLRRYSVIILDEAHERSLNTDILIGMLTRVIKIRQEYYEEQQK 399
Query: 174 ----------------LKLIVTSATL---DAVKFSQYFFEAP-IFTIPGRTFPVEVLYTK 293
LKLI+ SATL D V + F P + +P R +PV + ++K
Sbjct: 400 SLQSGGTVTSECQITPLKLILMSATLRVEDFVSGKRLFPNIPPLIEVPTRQYPVTIHFSK 459
Query: 294 EPE-TDYLDASLITVMQIHLREPPGDILLFLTGQEEIDTACEILYERMKSL 443
+ E DY+ + VM IH + P G IL+F+TGQ E+D CE L + K L
Sbjct: 460 KTEIVDYIGEAYKKVMSIHKKLPQGGILVFVTGQREVDYLCEKLRKSSKEL 510
Score = 98.3 bits (234), Expect = 5e-21
Identities = 55/103 (53%), Positives = 66/103 (64%), Gaps = 1/103 (0%)
Frame = +3
Query: 459 ELIILPVYSALPSEMQTRIFEPAPPGSRXVVIATNIAETSLTIDGIYYVVDPGFVKQKVY 638
+L +LP+Y+ L Q R+FE R VV+ATN+AETSLTI GI YVVD G VK K Y
Sbjct: 646 KLRVLPLYAMLSPAAQLRVFEEVEKEERLVVVATNVAETSLTIPGIKYVVDTGRVKVKNY 705
Query: 639 NSKTGMDSLGVTPIXAXGGETSRPAGRAA-PGPGKCYRLYTGA 764
+SKTGM+S V I S+ AGRA GPG CYRLY+ A
Sbjct: 706 DSKTGMESYEVDWISQ--ASASQRAGRAGRTGPGHCYRLYSSA 746
>At2g35920.1 68415.m04409 helicase domain-containing protein similar
to DEIH-box RNA/DNA helicase [Arabidopsis thaliana]
GI:5881579; contains Pfam profiles PF04408: Helicase
associated domain (HA2), PF00271: Helicase conserved
C-terminal domain
Length = 995
Score = 87.8 bits (208), Expect = 7e-18
Identities = 55/151 (36%), Positives = 81/151 (53%), Gaps = 3/151 (1%)
Frame = +3
Query: 312 LDASLI--TVMQIHLREPPGDILLFLTGQEEIDTACEILYERMKSLGPDVPELIILPVYS 485
+D L+ T+ I E G IL+FLTG +EI E + M + D + ++LP++
Sbjct: 485 IDVDLVEATIEHICRLEGGGAILVFLTGWDEISKLLEKI--NMNNFLGDSSKFLVLPLHG 542
Query: 486 ALPSEMQTRIFEPAPPGSRXVVIATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGMDSL 665
++P+ Q IF+ PP R +V+ATNIAE+S+TID + YVVD G K+ Y++ + L
Sbjct: 543 SMPTVNQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKVACL 602
Query: 666 GVTPIXAXGGETSRPAGRAA-PGPGKCYRLY 755
P + GRA G CYRLY
Sbjct: 603 --LPSWISKASAHQRRGRAGRVQAGVCYRLY 631
Score = 77.4 bits (182), Expect = 1e-14
Identities = 38/96 (39%), Positives = 61/96 (63%)
Frame = +3
Query: 9 TVIKYMTDGMLLRECLMDLDLKAYSVIMLDEAHXRTIHTDVLFGLLKQAVQKRPELKLIV 188
T + + T G+LLR + D +L S +++DE H R ++ D L +L+ + +RP+L+LI+
Sbjct: 323 TRLLFCTTGVLLRRLIEDPNLTNVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLIL 382
Query: 189 TSATLDAVKFSQYFFEAPIFTIPGRTFPVEVLYTKE 296
SAT++A FS YF +P IPG TFPV L+ ++
Sbjct: 383 MSATINADMFSTYFGNSPTMHIPGFTFPVAELFLED 418
>At1g48650.1 68414.m05445 helicase domain-containing protein
contains similarity to DEIH-box RNA/DNA helicase
[Arabidopsis thaliana] GI:5881579; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain, PF00035:
Double-stranded RNA binding motif
Length = 1197
Score = 85.4 bits (202), Expect = 4e-17
Identities = 46/107 (42%), Positives = 66/107 (61%)
Frame = +3
Query: 3 RXTVIKYMTDGMLLRECLMDLDLKAYSVIMLDEAHXRTIHTDVLFGLLKQAVQKRPELKL 182
R T + + T G+LLR L+D LK + +++DE H R ++ D L +LK + +RP+LKL
Sbjct: 392 RDTRLLFCTTGVLLRRLLVDRSLKGVTHVVVDEIHERGMNEDFLLIVLKDLLPRRPDLKL 451
Query: 183 IVTSATLDAVKFSQYFFEAPIFTIPGRTFPVEVLYTKEPETDYLDAS 323
I+ SATL+A FS YF AP IPG T+PV + + DYL+ S
Sbjct: 452 ILMSATLNAELFSSYFGGAPAMHIPGFTYPVRAHFLE----DYLETS 494
Score = 79.8 bits (188), Expect = 2e-15
Identities = 53/153 (34%), Positives = 84/153 (54%), Gaps = 3/153 (1%)
Frame = +3
Query: 306 DYLDASLITVMQIHL--REPPGDILLFLTGQEEIDTACEILYERMKSLGPDVPELIILPV 479
D + +LI + H+ E PG +L+F+TG ++I++ L E LG D ++++L
Sbjct: 558 DSIGFNLIENVLCHIVKGERPGAVLVFMTGWDDINSLKNQL-EAHSLLG-DPNKVLLLAC 615
Query: 480 YSALPSEMQTRIFEPAPPGSRXVVIATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGMD 659
+ ++ S Q IF+ P G R +V+ATN+AETS+TI+ + YV+D G K+ Y++
Sbjct: 616 HGSMASSEQRLIFDRPPEGIRKIVLATNMAETSITINDVVYVIDCGKAKETSYDALNNTP 675
Query: 660 SLGVTPIXAXGGETSR-PAGRAAPGPGKCYRLY 755
L + I R AGR PG+CY LY
Sbjct: 676 CLLPSWISKAAARQRRGRAGRVM--PGECYHLY 706
>At1g58060.1 68414.m06580 helicase domain-containing protein contains
similarity to SP|P24785 Dosage compensation regulator
(Male-less protein) (No action potential protein)
{Drosophila melanogaster}; contains Pfam profiles
PF04408: Helicase associated domain (HA2), PF00271:
Helicase conserved C-terminal domain
Length = 1459
Score = 84.6 bits (200), Expect = 6e-17
Identities = 57/159 (35%), Positives = 83/159 (52%), Gaps = 3/159 (1%)
Frame = +3
Query: 291 KEPETDYLDASLITVMQIHLREP--PGDILLFLTGQEEIDTACEILYERMKSLGPDVPEL 464
K D +D L+ + H+ + G IL+FL G EI ++L + GP L
Sbjct: 890 KRLNEDRIDYELLEELICHIDDTCEEGAILIFLPGVAEIYMLLDMLAASYRFRGPAADWL 949
Query: 465 IILPVYSALPSEMQTRIFEPAPPGSRXVVIATNIAETSLTIDGIYYVVDPGFVKQKVYNS 644
LP++S++ S Q ++F P G R V+ ATNIAETS+TID + YV+D G K+ YN
Sbjct: 950 --LPLHSSIASSEQRKVFLRPPKGLRKVIAATNIAETSITIDDVVYVIDSGKHKENRYNP 1007
Query: 645 KTGMDSLGVTPI-XAXGGETSRPAGRAAPGPGKCYRLYT 758
+ + S+ I A + + AGR PG C+ LYT
Sbjct: 1008 QKKLSSMVEDWISQANARQRTGRAGRVK--PGICFSLYT 1044
Score = 66.5 bits (155), Expect = 2e-11
Identities = 38/102 (37%), Positives = 59/102 (57%), Gaps = 6/102 (5%)
Frame = +3
Query: 9 TVIKYMTDGMLLRECLMDLDLKAYSVIMLDEAHXRTIHTDVLFGLLKQAVQKRP------ 170
T + + T G+LLR+ D L + I++DE H R++ D L +LK ++K+
Sbjct: 713 TRLLFCTTGILLRKLAGDRTLNDVTHIIVDEVHERSLLGDFLLIILKSLIEKQSCDNTSR 772
Query: 171 ELKLIVTSATLDAVKFSQYFFEAPIFTIPGRTFPVEVLYTKE 296
+LK+I+ SAT+DA FS+YF P+ T GRT PV + +E
Sbjct: 773 KLKVILMSATVDADLFSRYFGHCPVITAQGRTHPVTTHFLEE 814
>At2g30800.1 68415.m03755 DEIH-box RNA/DNA helicase, putative
similar to DEIH-box RNA/DNA helicase [Arabidopsis
thaliana] GI:5881579; contains Pfam profiles PF04408:
Helicase associated domain (HA2), PF00271: Helicase
conserved C-terminal domain
Length = 1299
Score = 81.8 bits (193), Expect = 5e-16
Identities = 50/141 (35%), Positives = 80/141 (56%), Gaps = 4/141 (2%)
Frame = +3
Query: 363 GDILLFLTGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFEPAPPGSR 542
G IL+FL G ++I+ + L E D + I+ ++S +P+ Q ++F PPG R
Sbjct: 552 GAILVFLPGWDDINKTRQRLLEN--PFFADSAKFDIICLHSMVPAGEQKKVFNRPPPGCR 609
Query: 543 XVVIATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGMDSLGVTPI-XAXGGETSRPAGR 719
+V+ATNIAE+++TID + YV+D G +K+K Y+ + +L + + A + AGR
Sbjct: 610 KIVLATNIAESAVTIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKANAKQRQGRAGR 669
Query: 720 AAPGPGKCYRLYT---GASLP 773
PG CY LY+ AS+P
Sbjct: 670 CQ--PGICYHLYSRLRAASMP 688
Score = 71.3 bits (167), Expect = 6e-13
Identities = 35/101 (34%), Positives = 60/101 (59%), Gaps = 3/101 (2%)
Frame = +3
Query: 3 RXTVIKYMTDGMLLRECLMDLDLKAYSVI---MLDEAHXRTIHTDVLFGLLKQAVQKRPE 173
R + + + T+G+LLR + + + S I ++DE H R ++D + +++ + P
Sbjct: 279 RHSSVVFCTNGILLRVLVGKGSVSSVSDITHIIVDEIHERDCYSDFMLAIIRDLLPSNPH 338
Query: 174 LKLIVTSATLDAVKFSQYFFEAPIFTIPGRTFPVEVLYTKE 296
L+LI+ SATLDA +FS YF P+ +PG T+PV LY ++
Sbjct: 339 LRLILMSATLDAERFSGYFGGCPVVRVPGFTYPVRTLYLED 379
>At2g01130.1 68415.m00021 helicase domain-containing protein similar
to DEIH-box RNA/DNA helicase [Arabidopsis thaliana]
GI:5881579; contains Pfam profiles PF04408: Helicase
associated domain (HA2), PF00271: Helicase conserved
C-terminal domain
Length = 1112
Score = 81.0 bits (191), Expect = 8e-16
Identities = 41/91 (45%), Positives = 59/91 (64%)
Frame = +3
Query: 3 RXTVIKYMTDGMLLRECLMDLDLKAYSVIMLDEAHXRTIHTDVLFGLLKQAVQKRPELKL 182
R T + + T G+LLR L+D +L+ + +++DE H R ++ D L +LK + +R ELKL
Sbjct: 312 RDTRLLFCTTGILLRRLLVDRNLRGVTHVIVDEIHERGMNEDFLLIILKDLLSRRSELKL 371
Query: 183 IVTSATLDAVKFSQYFFEAPIFTIPGRTFPV 275
I+ SATLDA FS YF A + IPG T+PV
Sbjct: 372 ILMSATLDAELFSSYFGGAGVIYIPGFTYPV 402
Score = 76.6 bits (180), Expect = 2e-14
Identities = 49/135 (36%), Positives = 74/135 (54%), Gaps = 1/135 (0%)
Frame = +3
Query: 354 EPPGDILLFLTGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFEPAPP 533
E PG IL+FLTG ++I + E L PD+ +++L + ++ + Q IFE
Sbjct: 495 EGPGGILIFLTGWDDISSLKEKLQIHPIFGNPDL--VMLLACHGSMETFEQRLIFEEPAS 552
Query: 534 GSRXVVIATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGMDSLGVTPIXAXGGETSR-P 710
G R +V+ATNIAETS+TI+ + +V+D G K+ Y++ L + I + R
Sbjct: 553 GVRKIVLATNIAETSITINDVAFVIDCGKAKETSYDALNNTPCLLPSWISKVSAQQRRGR 612
Query: 711 AGRAAPGPGKCYRLY 755
AGR PG+CY LY
Sbjct: 613 AGRVR--PGQCYHLY 625
>At1g06670.1 68414.m00707 DEIH-box RNA/DNA helicase identical to
DEIH-box RNA/DNA helicase GB:BAA84364 GI:5881579
[Arabidopsis thaliana]
Length = 1576
Score = 81.0 bits (191), Expect = 8e-16
Identities = 53/141 (37%), Positives = 78/141 (55%), Gaps = 4/141 (2%)
Frame = +3
Query: 363 GDILLFLTGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFEPAPPGSR 542
G IL+FL G EEI E L + + IIL ++S +P+E Q ++F P G R
Sbjct: 576 GAILVFLPGWEEISKTKEKLLD--DRFFAHSAKFIILCLHSRVPAEEQKKVFNRPPRGCR 633
Query: 543 XVVIATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGMDSLGVTPIXAXGGETSRPAGRA 722
+V+ATNIAE+++TID + YV+D G +K+K Y+ + +L + + + AGRA
Sbjct: 634 KIVLATNIAESAVTIDDVVYVIDSGRMKEKSYDPYNDVSTLQSSWVSK--ANAKQRAGRA 691
Query: 723 AP-GPGKCYRLYT---GASLP 773
G CY LY+ ASLP
Sbjct: 692 GRCQAGICYHLYSKLRAASLP 712
Score = 68.9 bits (161), Expect = 3e-12
Identities = 33/98 (33%), Positives = 59/98 (60%), Gaps = 3/98 (3%)
Frame = +3
Query: 3 RXTVIKYMTDGMLLRECL---MDLDLKAYSVIMLDEAHXRTIHTDVLFGLLKQAVQKRPE 173
R + + + T+G+LLR + ++ + + I++DE H R ++D + +L+ + P
Sbjct: 309 RESSVVFCTNGILLRVLIGKGVNSSVPDITHIIVDEIHERDSYSDFMLMILRDLLPSNPH 368
Query: 174 LKLIVTSATLDAVKFSQYFFEAPIFTIPGRTFPVEVLY 287
L+LI+ SATLDA +FS+YF P+ +PG T+PV +
Sbjct: 369 LRLILMSATLDAERFSEYFGGCPVVRVPGFTYPVRTFF 406
>At1g58050.1 68414.m06579 helicase domain-containing protein contains
similarity to SP|P24785 Dosage compensation regulator
(Male-less protein) (No action potential protein)
{Drosophila melanogaster}; contains Pfam profiles
PF04408: Helicase associated domain (HA2), PF00271:
Helicase conserved C-terminal domain
Length = 1417
Score = 77.8 bits (183), Expect = 7e-15
Identities = 51/151 (33%), Positives = 75/151 (49%), Gaps = 2/151 (1%)
Frame = +3
Query: 312 LDASLITVMQIHLREP--PGDILLFLTGQEEIDTACEILYERMKSLGPDVPELIILPVYS 485
+D L+ + H+ + G IL+FL G EI+ L + G L LP++S
Sbjct: 864 VDYDLLEELICHIDDTCEEGAILVFLPGMSEINMLLNRLAASYRFRGASGDWL--LPLHS 921
Query: 486 ALPSEMQTRIFEPAPPGSRXVVIATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGMDSL 665
++ S Q ++F P G R V+IATNIAETS+TI+ + YV+D G K+ YN + S+
Sbjct: 922 SIASTEQKKVFLRPPKGIRKVIIATNIAETSITIEDVVYVIDSGKHKENRYNPHKKLSSM 981
Query: 666 GVTPIXAXGGETSRPAGRAAPGPGKCYRLYT 758
V + R PG C+ LYT
Sbjct: 982 -VEDWVSKANARQRMGRAGRVKPGHCFSLYT 1011
Score = 77.4 bits (182), Expect = 1e-14
Identities = 45/113 (39%), Positives = 69/113 (61%), Gaps = 8/113 (7%)
Frame = +3
Query: 9 TVIKYMTDGMLLRECLMDLDLKAYSVIMLDEAHXRTIHTDVLFGLLKQAVQKR------P 170
T + + T G+LLR+ + D LK + I++DE H R++ D L +LK ++K+ P
Sbjct: 693 TRLLFCTTGILLRKLVGDTTLKDVTHIIVDEVHERSLMGDFLLIILKSLIEKQSWDNALP 752
Query: 171 ELKLIVTSATLDAVKFSQYFFEAPIFTIPGRTFPVEVLYTKE--PETDYLDAS 323
+LK+I+ SAT+DA +FS+YF + PI T GRT PV + ++ T YL AS
Sbjct: 753 KLKVILMSATVDAHQFSRYFGQCPIITAQGRTHPVTTYFLEDIYERTKYLLAS 805
>At5g04895.1 68418.m00514 helicase domain-containing protein similar
to DEIH-box RNA/DNA helicase [Arabidopsis thaliana]
GI:5881579;contains Pfam profiles PF04408: Helicase
associated domain (HA2), PF00271: Helicase conserved
C-terminal domain, PF00035: Double-stranded RNA binding
motif
Length = 581
Score = 60.5 bits (140), Expect = 1e-09
Identities = 34/85 (40%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Frame = +3
Query: 504 QTRIFEPAPPGSRXVVIATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGMDSLGVTPIX 683
Q IFE APP R +V+ATN+AE S+TI+ + +VVD G K+ Y++ L P
Sbjct: 6 QRLIFERAPPNIRKIVLATNMAEASITINDVVFVVDCGKAKETTYDALNNTPCL--LPSW 63
Query: 684 AXGGETSRPAGRAAP-GPGKCYRLY 755
+ GRA PG+CY LY
Sbjct: 64 ISQASARQRRGRAGRLFPGECYHLY 88
>At2g47680.1 68415.m05955 zinc finger (CCCH type) helicase family
protein similar to SP|Q28141 ATP-dependent RNA helicase
A (Nuclear DNA helicase II) (DEAD-box protein 9) {Bos
taurus}; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 1015
Score = 58.4 bits (135), Expect = 5e-09
Identities = 72/283 (25%), Positives = 129/283 (45%), Gaps = 33/283 (11%)
Frame = +3
Query: 15 IKYMTDGMLLRECL-MDLDLKAYSVIMLDEAHXRTIHTDVLFGLLKQAVQKRPELKLIVT 191
I + T G+LL E L L+ Y VI+LDE H R++ +D++ +KQ + K +L++++
Sbjct: 116 ILFKTAGVLLDEMLDKGLNALKYKVIILDEVHERSVESDLVLVCVKQFLMKNNDLRVVLM 175
Query: 192 SATLDAVKFSQYFFE------APIFTIPG---RT-FPVEVLYTKEPE-----TDYLDA-- 320
SAT D ++ YF E + IP RT F VLY ++ + L A
Sbjct: 176 SATADITRYRDYFKELGRGERVEVVAIPSPDQRTIFQRRVLYLEQVAGLLGVSSDLSAYC 235
Query: 321 ------SLITVMQIHLREPPGDILLFLTGQE-EIDTACEI-------LYERMKSLGPDVP 458
S T ++ L+ D++L++ +E +I+ + + L ++ L P
Sbjct: 236 PGPSPSSADTEIKPELQNLIHDLILYIHEKEPDIEKSILVFLPTYYSLEQQYHQLEPFFA 295
Query: 459 ELIILPVYSALPSEMQTRIFEPAPPGSRXVVIATNIAETSLTIDGIYYVVDPGFVKQKVY 638
+ ++ ++ +E + + ++ ATNIAE+S+TI + YV+D Q +
Sbjct: 296 SFEVHILHRSIDTEQALAAMKICRSRRKVIL-ATNIAESSVTIPKVAYVIDSCRSLQVFW 354
Query: 639 NSKTGMDSLGVTPIXAXGGETSR-PAGRAAPGPGKCYRLYTGA 764
+ D++ + + E R GR G+ YRL A
Sbjct: 355 DPSRKRDAVQLVWVSRSQAEQRRGRTGRTC--DGEVYRLVPSA 395
>At4g25620.1 68417.m03690 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965; Common family member At5g52430
[Arabidopsis thaliana];
Length = 449
Score = 29.9 bits (64), Expect = 2.0
Identities = 33/109 (30%), Positives = 45/109 (41%), Gaps = 7/109 (6%)
Frame = +3
Query: 438 SLGPDVPEL--IILPVYSALPSEMQTRIFEPAP--PGSRXVVIA---TNIAETSLTIDGI 596
++GP E + PV+SA +E T F P P P S V A T+ E + G
Sbjct: 127 TIGPYAHETQPVTPPVFSAFTTEPSTAPFTPPPESPSSPEVPFAQLLTSSLERARRNSG- 185
Query: 597 YYVVDPGFVKQKVYNSKTGMDSLGVTPIXAXGGETSRPAGRAAPGPGKC 743
G + QK + S V P G S +G ++P PGKC
Sbjct: 186 ------GGMNQKFSAAHYEFKSCQVYPGSPGGNLISPGSGTSSPYPGKC 228
>At5g32590.1 68418.m03867 myosin heavy chain-related similar to
Myosin heavy chain, non-muscle (Zipper protein) (Myosin
II)(SP:Q99323) {Drosophila melanogaster}
Length = 761
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/76 (19%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Frame = +3
Query: 57 MDLDLKAY--SVIMLDEAHXRTIHTDVLFGLLKQAVQKRPELKLIVTSATLDAVKFSQYF 230
++ D+K Y ++++LD+ H LK ++++ ++ S++ + +F +++
Sbjct: 612 LESDIKEYESNLLLLDQTHEDDFSEKQERNELKTVLEEKRSRLAVLPSSSFNPQQFEEFY 671
Query: 231 FEAPIFTIPGRTFPVE 278
E+P G + P+E
Sbjct: 672 TESPPLDQSGPSDPME 687
>At5g06400.1 68418.m00716 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 1030
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = -3
Query: 236 LEEVLRELDGVERGGRD--DELEFGALLHGLLQQTEQHVGVD 117
LEE L EL E G R D+ +G+++HGLLQ+ + +D
Sbjct: 835 LEEALSELASFE-GERSLLDQYTYGSIVHGLLQRGDLQKALD 875
>At4g15236.1 68417.m02335 ABC transporter family protein similar to
pleiotropic drug resistance like protein [Nicotiana
tabacum] GI:20522008, ABC1 protein [Nicotiana
plumbaginifolia] GI:14331118; contains Pfam profile
PF00005: ABC transporter
Length = 1388
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/64 (23%), Positives = 26/64 (40%)
Frame = +3
Query: 96 DEAHXRTIHTDVLFGLLKQAVQKRPELKLIVTSATLDAVKFSQYFFEAPIFTIPGRTFPV 275
D H + + F L+K PEL L V+ + + YF+ A + IP +
Sbjct: 533 DSLHANYLMGSLFFSLIKLLADGLPELTLTVSRIAVFCKQKELYFYPAWAYAIPSAILKI 592
Query: 276 EVLY 287
+ +
Sbjct: 593 PISF 596
>At5g55680.1 68418.m06942 glycine-rich protein
Length = 208
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = -3
Query: 296 FLGVQ--DFDGEGSTGDGEDRGLEEVLRELDGVERGGRDDELEFGALLHG 153
F+GV+ DFDG+ DGE G E ++DGV + ++ +F G
Sbjct: 128 FVGVKTGDFDGDAVVQDGEVAG--ERTGDIDGVTKAAGEETEDFSGDFEG 175
>At5g41620.1 68418.m05057 expressed protein weak similarity to
microtubule binding protein D-CLIP-190 (GI:2773363)
[Drosophila melanogaster]; weak similarity to
Synaptonemal complex protein 1 (SCP-1 protein)
(Swiss-Prot:Q15431) [Homo sapiens]; weak similarity to
DNA double-strand break repair rad50 ATPase.
(Swiss-Prot:P58301) [Pyrococcus furiosus]
Length = 543
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/60 (26%), Positives = 27/60 (45%)
Frame = -3
Query: 590 VDGQRRLRDVGGDHHXPGAGGRRLEDPGLHLGRQRRVHRQNYQLRHVRPQGLHSLVQYLT 411
+D + LRD DH AG R + + + + + R N+ L+ V P S ++ T
Sbjct: 29 LDLSQFLRDPSPDHQPDSAGSLRRQIGQMLIKHHQSIDRNNHALQPVSPASYGSSLEVTT 88
>At4g21990.1 68417.m03183 5'-adenylylsulfate reductase (APR3) / PAPS
reductase homolog (PRH26) identical to
5'-adenylylsulfate reductase [Arabidopsis thaliana]
GI:2738760; identical to cDNA PAPS reductase homolog
(PRH26) GI:1710113
Length = 458
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/45 (40%), Positives = 29/45 (64%)
Frame = -1
Query: 430 LSYNISHAVSISSWPVRNSRISPGGSLRWICMTVISEASK*SVSG 296
+S + S A+S SS+P + +++ GSLR + T +S AS S+SG
Sbjct: 7 VSSSSSSAISSSSFPSSDLKVTKIGSLRLLNRTNVSAASL-SLSG 50
>At4g15233.1 68417.m02334 ABC transporter family protein similar to
pleiotropic drug resistance like protein [Nicotiana
tabacum] GI:20522008, PDR5-like ABC transporter
[Spirodela polyrhiza] GI:1514643; contains Pfam profile
PF00005: ABC transporter
Length = 1168
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/64 (21%), Positives = 25/64 (39%)
Frame = +3
Query: 96 DEAHXRTIHTDVLFGLLKQAVQKRPELKLIVTSATLDAVKFSQYFFEAPIFTIPGRTFPV 275
D H + + F L K PEL L ++ + + YF+ A + IP +
Sbjct: 517 DSLHANYLMGSLFFSLFKLLADGLPELTLTISRIAVFCKQKELYFYPAWAYAIPSAILKI 576
Query: 276 EVLY 287
+ +
Sbjct: 577 PISF 580
>At1g17450.1 68414.m02137 ATP phosphoribosyltransferase -related
contains weak similarity to Swiss-Prot:P10366 ATP
phosphoribosyltransferase [Escherichia coli]
Length = 1402
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -1
Query: 457 GTSGPKDFILSYNISHAVSISSWPV 383
G SG + F+LS N H++S S +PV
Sbjct: 929 GGSGGQPFVLSQNFLHSISKSPFPV 953
>At4g02010.1 68417.m00271 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 725
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -1
Query: 547 TFLEPGGAGSKIRVCISDGSAEYTGRIISSGTSGPKDF 434
+ L GG G R ++DG+A ++ S G G K+F
Sbjct: 384 SILGEGGFGKVYRGILADGTAVAIKKLTSGGPQGDKEF 421
>At2g43440.1 68415.m05399 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640 :
F-box protein interaction domain
Length = 791
Score = 27.9 bits (59), Expect = 7.9
Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 4/109 (3%)
Frame = +3
Query: 339 QIHLREPPGDILLFLTGQEEIDTACE--ILYERMKSLGPDVPELIILPV--YSALPSEMQ 506
+I L P IL F T ++ + E + ER ++L + P+++ Y P +
Sbjct: 406 EIFLGLPLKSILKFKTVSKQWRSILESNLFVERRRTLQKNHPKILAAYNCDYCTRPGILP 465
Query: 507 TRIFEPAPPGSRXVVIATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTG 653
FE V + T+ + S+T DG+ + +PG+ V N TG
Sbjct: 466 KSQFEG---DEEIVYLHTDATQPSMTCDGLVCITEPGWF--NVLNVSTG 509
>At2g35350.1 68415.m04334 protein phosphatase 2C family protein /
PP2C family protein similar to protein phosphatase-2c
(GI:3608412) [Mesembryanthemum crystallinum]; contains
Pfam PF00481 : Protein phosphatase 2C domain
Length = 783
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 444 GPDVPELIILPVYSALPSEMQTRIFE 521
GPD PE ++ +Y A+ SE+Q +E
Sbjct: 299 GPDAPEFLMANLYRAVHSELQGLFWE 324
>At2g21680.1 68415.m02579 kelch repeat-containing F-box family
protein low similarity to SKP1 interacting partner 6
[Arabidopsis thaliana] GI:10716957; contains Pfam
profiles PF01344: Kelch motif, PF00646: F-box domain
Length = 414
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = -3
Query: 584 GQRRLRDVGGDHHXPGAGGRRLEDP--GLHLGRQR 486
G++ L DVG ++ P +GGRR E G H G +R
Sbjct: 153 GEKLLEDVGVGYNKPISGGRRGETSIRGGHAGERR 187
>At1g70100.3 68414.m08067 expressed protein
Length = 504
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -3
Query: 311 IVRLRFLGVQ-DFDGEGSTGDGEDRGLEEVLRELDGVERGG 192
IVR F Q FD ST DG+D ++VL + V+R G
Sbjct: 371 IVRRAFKSFQKSFDQMKSTDDGQDTAPKQVLAKATAVQRLG 411
>At1g70100.2 68414.m08066 expressed protein
Length = 482
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -3
Query: 311 IVRLRFLGVQ-DFDGEGSTGDGEDRGLEEVLRELDGVERGG 192
IVR F Q FD ST DG+D ++VL + V+R G
Sbjct: 371 IVRRAFKSFQKSFDQMKSTDDGQDTAPKQVLAKATAVQRLG 411
>At1g70100.1 68414.m08065 expressed protein
Length = 467
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -3
Query: 311 IVRLRFLGVQ-DFDGEGSTGDGEDRGLEEVLRELDGVERGG 192
IVR F Q FD ST DG+D ++VL + V+R G
Sbjct: 371 IVRRAFKSFQKSFDQMKSTDDGQDTAPKQVLAKATAVQRLG 411
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,782,988
Number of Sequences: 28952
Number of extensions: 346671
Number of successful extensions: 1302
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 1190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1267
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1726528800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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