Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0152
(724 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52425| Best HMM Match : Arm (HMM E-Value=9.7e-28) 161 5e-40
SB_20122| Best HMM Match : Arm (HMM E-Value=1.2e-24) 109 2e-24
SB_29650| Best HMM Match : Arm (HMM E-Value=7.30076e-43) 98 6e-21
SB_2550| Best HMM Match : No HMM Matches (HMM E-Value=.) 98 6e-21
SB_3360| Best HMM Match : No HMM Matches (HMM E-Value=.) 64 8e-11
SB_35833| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 2e-08
SB_22229| Best HMM Match : Arm (HMM E-Value=0) 40 0.002
SB_19563| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_53106| Best HMM Match : PLAT (HMM E-Value=0) 34 0.13
SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.41
SB_38760| Best HMM Match : Ras (HMM E-Value=4.6e-06) 32 0.54
SB_16018| Best HMM Match : Antimicrobial18 (HMM E-Value=0.89) 31 0.95
SB_52978| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_25234| Best HMM Match : SMC_hinge (HMM E-Value=3.7e-28) 30 2.2
SB_57766| Best HMM Match : MFS_1 (HMM E-Value=2.4e-14) 30 2.2
SB_27138| Best HMM Match : Ebp2 (HMM E-Value=1.8) 30 2.2
SB_17370| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_51335| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_51370| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_22495| Best HMM Match : DUF116 (HMM E-Value=8.1) 29 5.0
SB_47670| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_38184| Best HMM Match : HisKA_2 (HMM E-Value=8.6) 29 5.0
SB_19444| Best HMM Match : zf-C3HC4 (HMM E-Value=0.011) 29 5.0
SB_45305| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_6714| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_5831| Best HMM Match : TolA (HMM E-Value=0.0037) 28 6.7
SB_46871| Best HMM Match : PAN (HMM E-Value=1) 28 6.7
SB_46036| Best HMM Match : PSRT (HMM E-Value=1) 28 6.7
SB_27445| Best HMM Match : DUF227 (HMM E-Value=9.9) 28 6.7
SB_25304| Best HMM Match : HDV_ag (HMM E-Value=0.55) 28 6.7
SB_15433| Best HMM Match : Arm (HMM E-Value=9.7) 28 6.7
SB_38133| Best HMM Match : TolA (HMM E-Value=0.38) 28 8.8
SB_5618| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
SB_24364| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
>SB_52425| Best HMM Match : Arm (HMM E-Value=9.7e-28)
Length = 234
Score = 161 bits (391), Expect = 5e-40
Identities = 88/154 (57%), Positives = 106/154 (68%)
Frame = +2
Query: 263 KREETLQKRRNVPISYSTDEEEIDKNLATTDLDELVMNAANAENPEAQLAAVQQCRKLLS 442
KRE+ +QKRRNVP+ +E D+ DL+ +VM A + ++P QL AVQ RKLLS
Sbjct: 2 KREDCMQKRRNVPLELP---DEKDEKFQRRDLNAIVMEAGS-DDPSVQLGAVQAARKLLS 57
Query: 443 CDKNPPIDELIAAGILPILXQCLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVP 622
DKNPPID+LI N +LQFE AWALTNIASGTS QT VV+AGAVP
Sbjct: 58 KDKNPPIDDLI----------------NHSLQFEAAWALTNIASGTSEQTQAVVNAGAVP 101
Query: 623 VFLQLLMSPHENVCDXAVWALGNIIGDGPVLRDF 724
FL+LL SP ++VC+ AVWALGNI+GDGPVLRDF
Sbjct: 102 FFLKLLNSPRQHVCEQAVWALGNIVGDGPVLRDF 135
>SB_20122| Best HMM Match : Arm (HMM E-Value=1.2e-24)
Length = 163
Score = 109 bits (263), Expect = 2e-24
Identities = 57/103 (55%), Positives = 71/103 (68%)
Frame = +2
Query: 413 AVQQCRKLLSCDKNPPIDELIAAGILPILXQCLSRADNPALQFETAWALTNIASGTSAQT 592
+VQ RK+LS +K+PPID++I NP LQFE AWALTNIASGTS QT
Sbjct: 13 SVQSVRKMLSKEKSPPIDDVI----------------NPLLQFEAAWALTNIASGTSEQT 56
Query: 593 NKVVHAGAVPVFLQLLMSPHENVCDXAVWALGNIIGDGPVLRD 721
V GAVP+F++LL S H+NV + AVWALGNI GDGP++R+
Sbjct: 57 KAVQEGGAVPMFVKLLSSVHDNVAEQAVWALGNIAGDGPLMRN 99
Score = 31.5 bits (68), Expect = 0.72
Identities = 24/73 (32%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Frame = +2
Query: 482 GILPILXQCLSRA-DNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVFLQLLM-SPHE 655
G +P+ + LS DN A Q WAL NIA N V+ GA+ L L+ S
Sbjct: 63 GAVPMFVKLLSSVHDNVAEQ--AVWALGNIAGDGPLMRNTVIACGALGPLLALIKPSTSI 120
Query: 656 NVCDXAVWALGNI 694
W L N+
Sbjct: 121 QFLRNVTWTLSNL 133
>SB_29650| Best HMM Match : Arm (HMM E-Value=7.30076e-43)
Length = 215
Score = 98.3 bits (234), Expect = 6e-21
Identities = 44/66 (66%), Positives = 53/66 (80%)
Frame = +2
Query: 524 NPALQFETAWALTNIASGTSAQTNKVVHAGAVPVFLQLLMSPHENVCDXAVWALGNIIGD 703
+P LQFE AWALTNIASGTS QT V GAVP+F++LL S H+NV + AVWALGNI GD
Sbjct: 18 HPLLQFEAAWALTNIASGTSEQTKAVQEGGAVPMFVKLLSSVHDNVAEQAVWALGNIAGD 77
Query: 704 GPVLRD 721
GP++R+
Sbjct: 78 GPLMRN 83
Score = 53.2 bits (122), Expect = 2e-07
Identities = 27/83 (32%), Positives = 44/83 (53%)
Frame = +2
Query: 446 DKNPPIDELIAAGILPILXQCLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPV 625
+KNPP D +LP + + + D L +T WAL+ + G + + V+ +G VP
Sbjct: 120 NKNPPPDVTAVQQVLPAIARLILSDDKEVLA-DTCWALSYLTDGVNERIQLVLDSGVVPK 178
Query: 626 FLQLLMSPHENVCDXAVWALGNI 694
++LL P NV + A WA+ N+
Sbjct: 179 LVELLGYPEVNVLE-AAWAISNV 200
Score = 31.5 bits (68), Expect = 0.72
Identities = 24/73 (32%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Frame = +2
Query: 482 GILPILXQCLSRA-DNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVFLQLLM-SPHE 655
G +P+ + LS DN A Q WAL NIA N V+ GA+ L L+ S
Sbjct: 47 GAVPMFVKLLSSVHDNVAEQ--AVWALGNIAGDGPLMRNTVIACGALGPLLALIKPSTSI 104
Query: 656 NVCDXAVWALGNI 694
W L N+
Sbjct: 105 QFLRNVTWTLSNL 117
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/46 (32%), Positives = 27/46 (58%)
Frame = +2
Query: 452 NPPIDELIAAGILPILXQCLSRADNPALQFETAWALTNIASGTSAQ 589
N I ++ +G++P L + L + L E AWA++N+ +GT+ Q
Sbjct: 164 NERIQLVLDSGVVPKLVELLGYPEVNVL--EAAWAISNVTAGTAQQ 207
>SB_2550| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 929
Score = 98.3 bits (234), Expect = 6e-21
Identities = 55/127 (43%), Positives = 79/127 (62%), Gaps = 6/127 (4%)
Frame = +2
Query: 176 RMHVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEIDKNLATTD 355
R+ +KN DV EMRRRR E V+LRK KREE + KRRNV ++ ++ + L T+D
Sbjct: 689 RIKAYKNKSLDVSEMRRRREEEGVQLRKAKREEQMFKRRNVEVTRTSSTGSELEELLTSD 748
Query: 356 ------LDELVMNAANAENPEAQLAAVQQCRKLLSCDKNPPIDELIAAGILPILXQCLSR 517
L + ++ A +++ E QLAA Q+ RK+LS + NPPID++I G++P + L R
Sbjct: 749 YMAEGPLFQDMVQAIISDDVEMQLAATQRFRKILSKEPNPPIDDVIKCGVIPKFVEFLQR 808
Query: 518 ADNPALQ 538
DN ALQ
Sbjct: 809 EDNSALQ 815
>SB_3360| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 205
Score = 64.5 bits (150), Expect = 8e-11
Identities = 54/187 (28%), Positives = 85/187 (45%), Gaps = 4/187 (2%)
Frame = +2
Query: 173 NRMHVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEIDKNLATT 352
NR ++K G V R RR +LRK +RE L +R I ++ +E E +++
Sbjct: 2 NRKDLYKQGGHSVQAQRSRRRGQEADLRKERRERLLSSKR---IRFAEEEAE-EEDFTVE 57
Query: 353 DLDELVMNAANAENPEAQLAAVQQCRKLLSCDKNPPIDELIAA--GILPILXQCLS--RA 520
+ + A + L ++ RK + ELI+A G+ L +
Sbjct: 58 QVRDYAK--AIQKYDSNTLHCLRSLRKAFAQGS-----ELISAFMGVENGLRSVVGYLTG 110
Query: 521 DNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVFLQLLMSPHENVCDXAVWALGNIIG 700
N LQ E AW +TN+++GT T +V+ A A P + L + ++ D WALGN+ G
Sbjct: 111 HNIDLQLEAAWCITNLSAGTHEDTLRVLKA-AAPYLITYLSGQNLSLQDQCAWALGNMSG 169
Query: 701 DGPVLRD 721
D RD
Sbjct: 170 DSVECRD 176
>SB_35833| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1032
Score = 52.0 bits (119), Expect(2) = 2e-08
Identities = 25/35 (71%), Positives = 27/35 (77%)
Frame = +2
Query: 521 DNPALQFETAWALTNIASGTSAQTNKVVHAGAVPV 625
D +LQFE AWALTNIASGTS QT VV+AG PV
Sbjct: 760 DGHSLQFEAAWALTNIASGTSEQTQAVVNAGDGPV 794
Score = 41.5 bits (93), Expect = 7e-04
Identities = 29/80 (36%), Positives = 38/80 (47%)
Frame = +2
Query: 455 PPIDELIAAGILPILXQCLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVFLQ 634
PPID + +LP L + D L A+ NI +GT QT V++ GA+ F
Sbjct: 839 PPIDTI--REVLPALALLIHHQD---LDTAALRAVGNIVTGTDEQTQVVLNHGALSHFTG 893
Query: 635 LLMSPHENVCDXAVWALGNI 694
LL E + AVW L NI
Sbjct: 894 LLTHHKEKIKKEAVWFLSNI 913
Score = 24.2 bits (50), Expect(2) = 2e-08
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = +2
Query: 698 GDGPVLRDF 724
GDGPVLRDF
Sbjct: 790 GDGPVLRDF 798
>SB_22229| Best HMM Match : Arm (HMM E-Value=0)
Length = 1050
Score = 39.9 bits (89), Expect = 0.002
Identities = 27/82 (32%), Positives = 38/82 (46%)
Frame = +2
Query: 470 LIAAGILPILXQCLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVFLQLLMSP 649
++ G L L CL D P ++ AWAL IA + + VV AGAVP+ + + P
Sbjct: 119 VVDCGALDALVICLEEFD-PGVKEAAAWALGYIARHNAELSQAVVDAGAVPLLVLCIQEP 177
Query: 650 HENVCDXAVWALGNIIGDGPVL 715
+ A AL +I P L
Sbjct: 178 ELALKRIASSALSDICKHSPEL 199
Score = 29.9 bits (64), Expect = 2.2
Identities = 22/77 (28%), Positives = 34/77 (44%)
Frame = +2
Query: 464 DELIAAGILPILXQCLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVFLQLLM 643
+ ++ A ILP L L+ N + A+ L +A ++ VV GA+ + L
Sbjct: 75 EAVVKADILPQLVYSLAE-QNRFYKKAAAFVLRAVAKHSAQHAQCVVDCGALDALVICLE 133
Query: 644 SPHENVCDXAVWALGNI 694
V + A WALG I
Sbjct: 134 EFDPGVKEAAAWALGYI 150
>SB_19563| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 208
Score = 39.9 bits (89), Expect = 0.002
Identities = 23/75 (30%), Positives = 40/75 (53%)
Frame = +2
Query: 485 ILPILXQCLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVFLQLLMSPHENVC 664
+L + CL ++ + ++ E+ W L+N+ +G + VVHAG VPV +++L S ++
Sbjct: 20 LLHAVMACL-QSSHRHVRKESLWVLSNLTAGPAESCWAVVHAGLVPVTVKMLASEAFDIK 78
Query: 665 DXAVWALGNIIGDGP 709
L NI GP
Sbjct: 79 KEVALTLCNISYHGP 93
>SB_53106| Best HMM Match : PLAT (HMM E-Value=0)
Length = 1790
Score = 33.9 bits (74), Expect = 0.13
Identities = 16/40 (40%), Positives = 25/40 (62%)
Frame = +2
Query: 482 GILPILXQCLSRADNPALQFETAWALTNIASGTSAQTNKV 601
G +PI+ +CLS N ++F A L N++SGT + NK+
Sbjct: 1216 GGIPIVVRCLSH-QNDQVRFAAACVLRNLSSGTKSDQNKL 1254
>SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5222
Score = 32.3 bits (70), Expect = 0.41
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 4/97 (4%)
Frame = +2
Query: 212 DEMRRRRNEVTVEL-RKNKREETLQKRRNVPISYSTDEEEIDK---NLATTDLDELVMNA 379
+++RRRR E L RK K E K R I D E + K + T + E +
Sbjct: 3892 EKLRRRREEKEAALLRKQKEEAAKSKIRLDDIESKADVETLIKRQEGVQDTIIQEEITGT 3951
Query: 380 ANAENPEAQLAAVQQCRKLLSCDKNPPIDELIAAGIL 490
A +E +A + + R+ + + +D+L+A+G L
Sbjct: 3952 ARSEG-QASNEEIGEYRRRMGDNFCSTVDDLVASGQL 3987
>SB_38760| Best HMM Match : Ras (HMM E-Value=4.6e-06)
Length = 965
Score = 31.9 bits (69), Expect = 0.54
Identities = 21/88 (23%), Positives = 41/88 (46%)
Frame = +2
Query: 158 TDQAKNRMHVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEIDK 337
+DQ ++++VF ++ + V R+ N+ T R K + L N +++ T E I K
Sbjct: 155 SDQESDQLYVFADSKEKVQVSRQHENQATT--RMIKPQWGLTSFDNKTVAFKTLTESIGK 212
Query: 338 NLATTDLDELVMNAANAENPEAQLAAVQ 421
+ + LV + N E A+++
Sbjct: 213 EAEEIEKEVLVQKTVDHANGEVVNASLE 240
>SB_16018| Best HMM Match : Antimicrobial18 (HMM E-Value=0.89)
Length = 1494
Score = 31.1 bits (67), Expect = 0.95
Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 4/55 (7%)
Frame = -2
Query: 471 SSSIGGFLSHESSFLHCCTAANCASGF----SALAAFITSSSRSVVARFLSISSS 319
SSS+ FLS SS T+++ S F S+L+ F+TSS S+++ F+S SSS
Sbjct: 331 SSSLSDFLSLSSSLSDFLTSSSLPSDFLTSSSSLSDFLTSS--SLLSDFISSSSS 383
>SB_52978| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 879
Score = 30.3 bits (65), Expect = 1.7
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Frame = +2
Query: 131 ETASTDKMATDQAKNRMHVFKNAGKDVD-----EMRRRRNEVTVELRKNKREETLQKRRN 295
+TAS + ++ GKDVD E+RR+R E + +REE + RR
Sbjct: 437 DTASVATEVPSMRSSDKETVRSDGKDVDDSGSLELRRQREEARRLEEQRRREEEERTRRE 496
Query: 296 VPISYSTDEEE 328
+ +EEE
Sbjct: 497 KEEAQRREEEE 507
>SB_25234| Best HMM Match : SMC_hinge (HMM E-Value=3.7e-28)
Length = 552
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/64 (26%), Positives = 33/64 (51%)
Frame = +2
Query: 149 KMATDQAKNRMHVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEE 328
K TD + R + K+ E++R+R+E+T N R+E ++ + + +T EE
Sbjct: 200 KERTDDLEQRRSSIEQNNKEYSELKRKRDELT-----NTRKELWRQEAAMEQTINTAREE 254
Query: 329 IDKN 340
+ K+
Sbjct: 255 LSKS 258
>SB_57766| Best HMM Match : MFS_1 (HMM E-Value=2.4e-14)
Length = 499
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = -2
Query: 495 MGSIPAAMSSSIGGFLSHESSFLHCCTAANCASGFSALAAFITSSSRSVVARFLSIS 325
+GS+ A+S +G + + T CAS SA+ F+TS S+ +L+ S
Sbjct: 74 VGSLALALSIGLGPVFAKLINSFGARTVTICASVVSAVGLFVTSQVNSLPLMYLTYS 130
>SB_27138| Best HMM Match : Ebp2 (HMM E-Value=1.8)
Length = 841
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +2
Query: 317 DEEEIDKNLATTDLDELVMNAANAENPEAQLAAVQQCRKLLSCDKNPPIDELI 475
++EE+ A L+E V+NAA N L+A++ C K + D P +++
Sbjct: 336 EDEELILQFAEYLLEERVLNAATVSN---HLSAIEYCLKYIHKDSAPVFPDVV 385
>SB_17370| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1743
Score = 29.5 bits (63), Expect = 2.9
Identities = 17/56 (30%), Positives = 23/56 (41%)
Frame = -1
Query: 355 VGGSEVLVDLLLIGRIANGHITPFLKCFLSFVFS*LDCDFIPSPAHFIDIFACILE 188
+GG+ V +D +IGRI FL CF + C P H C+ E
Sbjct: 1488 IGGTSVSLDHRMIGRITRKFFVDFL-CFRNTAILRSSCKLQYLPIHVSGFSRCLFE 1542
>SB_51335| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 576
Score = 29.5 bits (63), Expect = 2.9
Identities = 25/105 (23%), Positives = 49/105 (46%), Gaps = 2/105 (1%)
Frame = +2
Query: 164 QAKNRMHVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEI--DK 337
Q + ++ N D +E R+ + ++RK K+E+ +KR+ V +++ EEE+ K
Sbjct: 130 QKRKKVQSKTNNKSDNEEEDERQEK---KIRKQKQEK--RKRKTVKADFNSSEEEVSSQK 184
Query: 338 NLATTDLDELVMNAANAENPEAQLAAVQQCRKLLSCDKNPPIDEL 472
A++ D+ MN A + + + S D+ + EL
Sbjct: 185 TKASSRKDQKKMNKQMANKGKGAKSKKKTIESNSSDDEEGQVAEL 229
>SB_51370| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +2
Query: 113 ITTYCVETASTDKMATDQAKNRMHVFKNAGKDVDEMRRR 229
I+ + ET ST + A + NR+++ K A +D +RRR
Sbjct: 346 ISEHYTETVSTVQNAIKECINRLNIRKKANGFLDTLRRR 384
>SB_22495| Best HMM Match : DUF116 (HMM E-Value=8.1)
Length = 440
Score = 28.7 bits (61), Expect = 5.0
Identities = 17/56 (30%), Positives = 23/56 (41%)
Frame = -1
Query: 355 VGGSEVLVDLLLIGRIANGHITPFLKCFLSFVFS*LDCDFIPSPAHFIDIFACILE 188
+GG+ V +D +IGRI FL CF + C P H C+ E
Sbjct: 341 IGGTSVSLDHRMIGRITRKLFVDFL-CFRNTAILRSSCKLQYLPIHVSGFSRCLFE 395
>SB_47670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 566
Score = 28.7 bits (61), Expect = 5.0
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +2
Query: 185 VFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEE 328
V+K A + R+R+E T E++K + +KRR + S +EEE
Sbjct: 123 VYKLAVLSAGKKIRKRHEKTTEMQKQTKMVPRKKRRVLSSSEEEEEEE 170
>SB_38184| Best HMM Match : HisKA_2 (HMM E-Value=8.6)
Length = 528
Score = 28.7 bits (61), Expect = 5.0
Identities = 17/56 (30%), Positives = 23/56 (41%)
Frame = -1
Query: 355 VGGSEVLVDLLLIGRIANGHITPFLKCFLSFVFS*LDCDFIPSPAHFIDIFACILE 188
+GG+ V +D +IGRI FL CF + C P H C+ E
Sbjct: 394 IGGTSVSLDHRMIGRITRKLFVDFL-CFRNTAILRSSCKLQYLPIHVSGFSRCLFE 448
>SB_19444| Best HMM Match : zf-C3HC4 (HMM E-Value=0.011)
Length = 434
Score = 28.7 bits (61), Expect = 5.0
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +2
Query: 158 TDQAKNRMHVFKNAGKDVDEMRRRRNEVTVELRKNKRE--ETLQKRRNVPISYSTDEEEI 331
T+Q V K D +E++ R +E+ +L KNK + ET ++ + I Y +++ +
Sbjct: 341 TEQIFQEKKVVKKLQVDEEEIKHRISELQNQLAKNKSKLSETQERCEKLEIRYDEEKQRL 400
>SB_45305| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 593
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/65 (21%), Positives = 30/65 (46%)
Frame = +2
Query: 182 HVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEIDKNLATTDLD 361
H A + +DE R+R+++ V ++ + EE L+ N ++ + E + + +
Sbjct: 238 HDKSQANRSIDEDRKRKSDELVSVKGDSEEEGLENVENTDVNGNEGPEAKKRKVIYQENS 297
Query: 362 ELVMN 376
L N
Sbjct: 298 GLAQN 302
>SB_6714| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 233
Score = 28.3 bits (60), Expect = 6.7
Identities = 20/90 (22%), Positives = 39/90 (43%)
Frame = +2
Query: 131 ETASTDKMATDQAKNRMHVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRRNVPISY 310
E DK DQ ++ + + K++D + + E+ E + +E + + +
Sbjct: 136 EMDKEDKEEMDQEMDKEEMDQEMDKEMD--KEDKEEMDQEEMDKQDKEEMDQEMDKQDKE 193
Query: 311 STDEEEIDKNLATTDLDELVMNAANAENPE 400
D+EE+DK D+ M+ + EN E
Sbjct: 194 EMDQEEMDKQDKENKEDKEEMDKQDKENKE 223
>SB_5831| Best HMM Match : TolA (HMM E-Value=0.0037)
Length = 703
Score = 28.3 bits (60), Expect = 6.7
Identities = 21/81 (25%), Positives = 38/81 (46%)
Frame = +2
Query: 191 KNAGKDVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEIDKNLATTDLDELV 370
+ A K +E R+R E +K K+EE L++++ + +E+E + L + +
Sbjct: 260 EEAEKKREEEERKRREEEEAAQKWKKEELLRQQQ---LEREKEEQERAERLQREREEAME 316
Query: 371 MNAANAENPEAQLAAVQQCRK 433
E EA+ AA + RK
Sbjct: 317 AEDLAEEAAEAEAAAAEAARK 337
>SB_46871| Best HMM Match : PAN (HMM E-Value=1)
Length = 525
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +2
Query: 239 VTVELRKNKREETLQKRRNVPISYSTDEEEIDKNLATTD 355
V ++ R N QK+ N+P S D E ID++L D
Sbjct: 380 VRLDSRTNSSSSKRQKKTNLPKSGENDVEIIDRSLVRDD 418
>SB_46036| Best HMM Match : PSRT (HMM E-Value=1)
Length = 878
Score = 28.3 bits (60), Expect = 6.7
Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Frame = +2
Query: 146 DKMATDQAKNRMHVFKNAGKDVDEMRRRRNEVTVE-LRKNK--REETLQKRRNVPISYST 316
D + NR KN+ R RR E +V LR++K REE QKR + P S
Sbjct: 329 DNSVSPPRGNRGRREKNSASP-SRRRGRREETSVSPLRRSKDSREEETQKRVDAPRDPSP 387
Query: 317 DEEE 328
EEE
Sbjct: 388 MEEE 391
>SB_27445| Best HMM Match : DUF227 (HMM E-Value=9.9)
Length = 129
Score = 28.3 bits (60), Expect = 6.7
Identities = 17/56 (30%), Positives = 23/56 (41%)
Frame = -1
Query: 355 VGGSEVLVDLLLIGRIANGHITPFLKCFLSFVFS*LDCDFIPSPAHFIDIFACILE 188
+GG+ V +D +IGRI FL CF + C P H C+ E
Sbjct: 5 IGGTSVSLDHRMIGRITRKLFVDFL-CFCNTAILRSSCKLQYLPIHVSVFSRCLFE 59
>SB_25304| Best HMM Match : HDV_ag (HMM E-Value=0.55)
Length = 2153
Score = 28.3 bits (60), Expect = 6.7
Identities = 20/97 (20%), Positives = 41/97 (42%), Gaps = 4/97 (4%)
Frame = +2
Query: 104 LCVITTYCVETASTDKMATDQAKNRMHVFKNAGKDVDEMRRRRNEVTVELRKNKREET-L 280
+C + +T + Q R + +N+G + + + E + R+ +RE+ L
Sbjct: 1295 ICQSLEHAGKTPPALSSISQQLDTRREIQENSGTNQPQTTDKPKETRSQKRRRRREKAKL 1354
Query: 281 QKRRNVP---ISYSTDEEEIDKNLATTDLDELVMNAA 382
P I + D +E + + T++DE + AA
Sbjct: 1355 YASLRTPSDDIVLANDSKEENGRVIVTEIDEAIAKAA 1391
>SB_15433| Best HMM Match : Arm (HMM E-Value=9.7)
Length = 237
Score = 28.3 bits (60), Expect = 6.7
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 4/92 (4%)
Frame = +2
Query: 311 STDEEEIDKNLATTDLDELVMNAANAENPEAQ-LAAVQQCRKLLSCDKNPPID---ELIA 478
S +E E+ N A L L + A E L+ Q RKL+ C + I ++
Sbjct: 56 SVNELEVSYNAAGI-LCHLASDGPTAWTAETMSLSRGQAMRKLIDCVEKWDIGATRQMSY 114
Query: 479 AGILPILXQCLSRADNPALQFETAWALTNIAS 574
PIL + + + + PA+Q WAL N+ +
Sbjct: 115 RSFGPIL-RLIPKYETPAIQHWATWALANLCN 145
>SB_38133| Best HMM Match : TolA (HMM E-Value=0.38)
Length = 2114
Score = 27.9 bits (59), Expect = 8.8
Identities = 18/86 (20%), Positives = 38/86 (44%)
Frame = +2
Query: 92 DSLFLCVITTYCVETASTDKMATDQAKNRMHVFKNAGKDVDEMRRRRNEVTVELRKNKRE 271
DSL + VI +T K ++ ++ K ++ ++ ++++ + +KN +E
Sbjct: 1861 DSLGMAVIEKSLQKTFHPKKKENEEEDDKKEK-KEENEEEEKKKKKKENEEEDDKKNNKE 1919
Query: 272 ETLQKRRNVPISYSTDEEEIDKNLAT 349
E + + +EEE DK T
Sbjct: 1920 ENEEDEKKEKKKKEENEEEDDKKKKT 1945
>SB_5618| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 801
Score = 27.9 bits (59), Expect = 8.8
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +2
Query: 284 KRRNVPISYSTDEEEIDKNLATTDLDELVMNAANAENPEAQLAAVQQCR 430
K N+P + +T +EE L T D E +N N+ + + L A+Q +
Sbjct: 19 KENNLPRTLATLQEETGITLNTVDSVESFVNEINSGHWDTVLTAIQSLK 67
>SB_24364| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 648
Score = 27.9 bits (59), Expect = 8.8
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +2
Query: 191 KNAGKDVDEMRRRRNEVTVELRKNKREETLQKRR 292
K+ +D DE++R+R V +R+ +R+ QKRR
Sbjct: 205 KDEKEDEDELKRKR--TGVRIRRRRRQRRKQKRR 236
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,713,908
Number of Sequences: 59808
Number of extensions: 495886
Number of successful extensions: 1582
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 1292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1514
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -