Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0150
         (775 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo...   190   3e-49
SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch...   189   3e-49
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa...    26   5.2  

>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  190 bits (462), Expect = 3e-49
 Identities = 106/222 (47%), Positives = 126/222 (56%), Gaps = 1/222 (0%)
 Frame = +3

Query: 6   MKVXRFVPGNGYAXKLFEVVDEHKLXIFYXKRMGAEXXADXLGDEWKGXVLRVAGGNDKQ 185
           MK+    P NG   KL E+ D+ +L +F  KRMG E   D +G E+ G V ++ GGNDKQ
Sbjct: 1   MKLNISYPANG-TQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQ 59

Query: 186 GXPMKXGVLTNSRVRLLMSXGHSCYRPRXDGXXKRXSXXGCXVDANLSVLXLVIVXKGAX 365
           G PM  GVL   RVRLL+  GH CYRPR DG  KR S  GC V  +L+VL L IV +G  
Sbjct: 60  GFPMFQGVLLPHRVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIVKQGEQ 119

Query: 366 EIPGLTDGNVPRRLGPKRASKXRXLFNLIKEND-XXXXXXXXXLPAXEGXXNAKPRHNAP 542
           +IPGLTD  VP+RLGPKRASK R  FNL KE+D          +P  EG    KP   AP
Sbjct: 120 DIPGLTDVTVPKRLGPKRASKIRRFFNLSKEDDVRQFVIRREVVPKKEG---KKPYTKAP 176

Query: 543 KIXRLVTPVXLQXXXXXXXXXXXXXXXXXSSEAEYAKLLAXR 668
           KI RLVTP  LQ                    AE+A+L+A R
Sbjct: 177 KIQRLVTPRTLQHKRHRFALKRRQAEKNREEAAEFAQLMAKR 218


>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  189 bits (461), Expect = 3e-49
 Identities = 105/222 (47%), Positives = 126/222 (56%), Gaps = 1/222 (0%)
 Frame = +3

Query: 6   MKVXRFVPGNGYAXKLFEVVDEHKLXIFYXKRMGAEXXADXLGDEWKGXVLRVAGGNDKQ 185
           MK+    P NG   KL E+ D+ +L +F  KRMG E   D +G E+ G V ++ GGNDKQ
Sbjct: 1   MKLNISYPANG-TQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQ 59

Query: 186 GXPMKXGVLTNSRVRLLMSXGHSCYRPRXDGXXKRXSXXGCXVDANLSVLXLVIVXKGAX 365
           G PM  GVL   RVRLL+  GH CYRPR DG  KR S  GC V  +L+VL L I+ +G  
Sbjct: 60  GFPMFQGVLLPHRVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIIKQGEQ 119

Query: 366 EIPGLTDGNVPRRLGPKRASKXRXLFNLIKEND-XXXXXXXXXLPAXEGXXNAKPRHNAP 542
           +IPGLTD  VP+RLGPKRASK R  FNL KE+D          +P  EG    KP   AP
Sbjct: 120 DIPGLTDVTVPKRLGPKRASKIRRFFNLSKEDDVRQFVIRREVVPKKEG---KKPYTKAP 176

Query: 543 KIXRLVTPVXLQXXXXXXXXXXXXXXXXXSSEAEYAKLLAXR 668
           KI RLVTP  LQ                    AE+A+L+A R
Sbjct: 177 KIQRLVTPRTLQHKRHRFALKRRQAEKNREEAAEFAQLMAKR 218


>SPAC19A8.08 |upf2||nonsense-mediated decay protein
           Upf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1049

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = -2

Query: 747 EFXXSRIEADRLRLIXFLATXPRNPSFXV 661
           EF     +A R RLI  L T PR  SF V
Sbjct: 467 EFYDLNTKASRNRLIKALCTIPRTSSFLV 495


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,030,892
Number of Sequences: 5004
Number of extensions: 26100
Number of successful extensions: 35
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)