Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0150
         (775 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560...   175   4e-44
07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706...   172   3e-43
06_03_0739 + 24004629-24005219                                         29   4.1  

>03_03_0207 -
           15455163-15455389,15455623-15455895,15455991-15456099,
           15456186-15456243,15457002-15457066,15457190-15457195
          Length = 245

 Score =  175 bits (425), Expect = 4e-44
 Identities = 102/219 (46%), Positives = 121/219 (55%), Gaps = 2/219 (0%)
 Frame = +3

Query: 27  PGNGYAXKLFEVVDEHKLXIFYXKRMGAEXXADXLGDEWKGXVLRVAGGNDKQGXPMKXG 206
           P  G   KL E+ D+ KL  FY KR+  E   D LG+E+KG V ++ GG DKQG PMK G
Sbjct: 8   PTTGCQKKL-EIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQG 66

Query: 207 VLTNSRVRLLMSXGHSCYR--PRXDGXXKRXSXXGCXVDANLSVLXLVIVXKGAXEIPGL 380
           VLT+ RVRLL+  G  C+R   R DG  +R S  GC V  +LSV+ LVIV KG  ++PGL
Sbjct: 67  VLTSGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGDNDLPGL 126

Query: 381 TDGNVPRRLGPKRASKXRXLFNLIKENDXXXXXXXXXLPAXEGXXNAKPRHNAPKIXRLV 560
           TD   PR  GPKRASK R LFNL K++D                 N K    APKI RLV
Sbjct: 127 TDTEKPRMRGPKRASKIRKLFNLAKDDDVRKYVNTYRRTFT--TKNGKKVSKAPKIQRLV 184

Query: 561 TPVXLQXXXXXXXXXXXXXXXXXSSEAEYAKLLAXRKKD 677
           TP+ LQ                 S  AEY KLLA R K+
Sbjct: 185 TPLTLQRKRARIAQKKQRIAKKKSEAAEYQKLLAQRLKE 223


>07_03_1309 +
           25669394-25669399,25669520-25669584,25670543-25670600,
           25670683-25670791,25670872-25671144,25671348-25671589
          Length = 250

 Score =  172 bits (418), Expect = 3e-43
 Identities = 101/219 (46%), Positives = 120/219 (54%), Gaps = 2/219 (0%)
 Frame = +3

Query: 27  PGNGYAXKLFEVVDEHKLXIFYXKRMGAEXXADXLGDEWKGXVLRVAGGNDKQGXPMKXG 206
           P  G   KL E+ D+ KL  F+ KR+  E   D LG+E+KG V ++ GG DKQG PMK G
Sbjct: 8   PTTGCQKKL-EIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQG 66

Query: 207 VLTNSRVRLLMSXGHSCYR--PRXDGXXKRXSXXGCXVDANLSVLXLVIVXKGAXEIPGL 380
           VLT  RVRLL+  G  C+R   R DG  +R S  GC V  +LSV+ LVIV KG  ++PGL
Sbjct: 67  VLTAGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGENDLPGL 126

Query: 381 TDGNVPRRLGPKRASKXRXLFNLIKENDXXXXXXXXXLPAXEGXXNAKPRHNAPKIXRLV 560
           TD   PR  GPKRASK R LFNL K++D                 N K    APKI RLV
Sbjct: 127 TDTEKPRMRGPKRASKIRKLFNLSKDDDVRKYVNTYRRTFT--TKNGKKVSKAPKIQRLV 184

Query: 561 TPVXLQXXXXXXXXXXXXXXXXXSSEAEYAKLLAXRKKD 677
           TP+ LQ                 S  AEY KLLA R K+
Sbjct: 185 TPLTLQRKRARIADKKKRIAKKKSEAAEYQKLLAQRLKE 223


>06_03_0739 + 24004629-24005219
          Length = 196

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 18/58 (31%), Positives = 25/58 (43%)
 Frame = -3

Query: 182 LVVAASDTKYXALPFIA*XISXXFGAHALXVKDTKLVLVHHFEQLXGIPVAGYETXNF 9
           ++V +SD K+  +  +   +   FG H L  K   LVL  H   L G P     T  F
Sbjct: 87  IIVTSSDAKWRTVSSL---LPRPFGPHDLLPKHVPLVLKPHDSPLVGNPATAVITNGF 141


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,432,156
Number of Sequences: 37544
Number of extensions: 200649
Number of successful extensions: 339
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 333
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)