Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0150
         (775 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)              203   1e-52
SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30)                   29   4.2  

>SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)
          Length = 212

 Score =  203 bits (495), Expect = 1e-52
 Identities = 103/190 (54%), Positives = 117/190 (61%)
 Frame = +3

Query: 111 EXXADXLGDEWKGXVLRVAGGNDKQGXPMKXGVLTNSRVRLLMSXGHSCYRPRXDGXXKR 290
           E   + LGDEWKG V R+ GGNDKQG PMK G++TN RVRLL+S GHSCYRPR  G  KR
Sbjct: 2   EVSGECLGDEWKGYVFRITGGNDKQGFPMKQGIMTNGRVRLLLSKGHSCYRPRRTGERKR 61

Query: 291 XSXXGCXVDANLSVLXLVIVXKGAXEIPGLTDGNVPRRLGPKRASKXRXLFNLIKENDXX 470
            S  GC VD+ LSVL LVIV KG  +IPGLTD  +PRRLGPKR  K R +FNL KE+D  
Sbjct: 62  KSVRGCIVDSQLSVLSLVIVKKGEQDIPGLTDNTIPRRLGPKRVGKIRKMFNLSKEDDVR 121

Query: 471 XXXXXXXLPAXEGXXNAKPRHNAPKIXRLVTPVXLQXXXXXXXXXXXXXXXXXSSEAEYA 650
                  LP  EG    K +  APKI RLVTPV LQ                    A+YA
Sbjct: 122 QYVIRRPLPEKEG---KKAKSKAPKIQRLVTPVVLQRKRKRLALKRQRAQKCKQEAADYA 178

Query: 651 KLLAXRKKDS 680
           KLLA R K++
Sbjct: 179 KLLAKRAKEA 188


>SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30)
          Length = 796

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = -3

Query: 236 QKTNXAVCQDAXFHRXSLLVVAASDTKYXALPFIA*XISXXFGAHALXVK 87
           Q+ + A+  D   H  SL V+  SD +  +LP I   +      H L ++
Sbjct: 257 QEADAAIGHDPLLHGKSLFVITTSDPEDVSLPLIPQALPRYLHGHTLVIE 306


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,078,824
Number of Sequences: 59808
Number of extensions: 216629
Number of successful extensions: 374
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 372
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2107953584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)