Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0150
         (775 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical ...   197   6e-51

>AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical
           protein Y71A12B.1 protein.
          Length = 246

 Score =  197 bits (481), Expect = 6e-51
 Identities = 114/251 (45%), Positives = 136/251 (54%), Gaps = 1/251 (0%)
 Frame = +3

Query: 6   MKVXRFVPGNGYAXKLFEVVDEHKLXIFYXKRMGAEXXADXLGDEWKGXVLRVAGGNDKQ 185
           M++    P  G   K FEV +E KL +F+ KRM  E   D LGDEWKG V+R+ GGNDKQ
Sbjct: 1   MRLNFAYPATGLQ-KSFEVDEEKKLRLFFEKRMSQEVAIDALGDEWKGYVVRIGGGNDKQ 59

Query: 186 GXPMKXGVLTNSRVRLLMSXGHSCYRPRXDGXXKRXSXXGCXVDANLSVLXLVIVXKGAX 365
           G PMK G+LTN RVRLL+  G SCYR R +G  KR S  GC VDAN+S L LVIV KG  
Sbjct: 60  GFPMKQGILTNGRVRLLLKKGQSCYRERKNGERKRKSVRGCIVDANMSALSLVIVKKGDG 119

Query: 366 EIPGLTDGNVPRRLGPKRASKXRXLFNLIKENDXXXXXXXXXLPAXEGXXNAKPRHNAPK 545
           EI GLTD  +PR+LGPKRASK R LFNL K +D             +G      +  APK
Sbjct: 120 EIEGLTDSVLPRKLGPKRASKIRKLFNLTKHDDVTKYVITHDKTFPDGV----TKTIAPK 175

Query: 546 IXRLVTPVXLQXXXXXXXXXXXXXXXXXSSEAEYAKLLAXRKKDS*GAS-PGXRSNAGGQ 722
           I RL+TP  +                     A Y KLLA   K+   A     RS+A   
Sbjct: 176 IQRLITPARIARKKYLLRQKRNQKIKMRDDAAAYHKLLAKYSKEEHDAKIARRRSSASHH 235

Query: 723 LQCVIXKTLXK 755
            +  + KT  K
Sbjct: 236 SESEVKKTSKK 246


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,602,827
Number of Sequences: 27780
Number of extensions: 157167
Number of successful extensions: 225
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)