Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0150
         (775 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) riboso...   169   2e-42
At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B)             168   4e-42

>At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) ribosomal
           protein S6, Arabidopsis thaliana, PID:g2662469
          Length = 250

 Score =  169 bits (411), Expect = 2e-42
 Identities = 101/219 (46%), Positives = 118/219 (53%), Gaps = 2/219 (0%)
 Frame = +3

Query: 27  PGNGYAXKLFEVVDEHKLXIFYXKRMGAEXXADXLGDEWKGXVLRVAGGNDKQGXPMKXG 206
           P  G   KL E+ D+ KL  FY KR+  E   D LG+E+KG V ++ GG DKQG PMK G
Sbjct: 8   PTTGCQKKL-EIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIKGGCDKQGFPMKQG 66

Query: 207 VLTNSRVRLLMSXGHSCYR--PRXDGXXKRXSXXGCXVDANLSVLXLVIVXKGAXEIPGL 380
           VLT  RVRLL+  G  C+R   R  G  +R S  GC V  +LSVL LVIV KG  ++PGL
Sbjct: 67  VLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGENDLPGL 126

Query: 381 TDGNVPRRLGPKRASKXRXLFNLIKENDXXXXXXXXXLPAXEGXXNAKPRHNAPKIXRLV 560
           TD   PR  GPKRASK R LFNL KE+D                   K    APKI RLV
Sbjct: 127 TDTEKPRMRGPKRASKIRKLFNLKKEDDVRTYVNTYRRKFTN--KKGKEVSKAPKIQRLV 184

Query: 561 TPVXLQXXXXXXXXXXXXXXXXXSSEAEYAKLLAXRKKD 677
           TP+ LQ                 S  A+Y KLLA R K+
Sbjct: 185 TPLTLQRKRARIADKKKKIAKANSDAADYQKLLASRLKE 223


>At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B)
          Length = 249

 Score =  168 bits (408), Expect = 4e-42
 Identities = 100/219 (45%), Positives = 118/219 (53%), Gaps = 2/219 (0%)
 Frame = +3

Query: 27  PGNGYAXKLFEVVDEHKLXIFYXKRMGAEXXADXLGDEWKGXVLRVAGGNDKQGXPMKXG 206
           P  G   KL E+ D+ KL  F+ KR+  E   D LG+E+KG V ++ GG DKQG PMK G
Sbjct: 8   PTTGCQKKL-EIDDDQKLRAFFDKRLSQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQG 66

Query: 207 VLTNSRVRLLMSXGHSCYR--PRXDGXXKRXSXXGCXVDANLSVLXLVIVXKGAXEIPGL 380
           VLT  RVRLL+  G  C+R   R  G  +R S  GC V  +LSVL LVIV KG  ++PGL
Sbjct: 67  VLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGVSDLPGL 126

Query: 381 TDGNVPRRLGPKRASKXRXLFNLIKENDXXXXXXXXXLPAXEGXXNAKPRHNAPKIXRLV 560
           TD   PR  GPKRASK R LFNL KE+D                   K    APKI RLV
Sbjct: 127 TDTEKPRMRGPKRASKIRKLFNLGKEDDVRKYVNTYRRTFTN--KKGKKVSKAPKIQRLV 184

Query: 561 TPVXLQXXXXXXXXXXXXXXXXXSSEAEYAKLLAXRKKD 677
           TP+ LQ                 S  A+Y KLLA R K+
Sbjct: 185 TPLTLQRKRARIADKKKRIAKANSDAADYQKLLASRLKE 223


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,032,106
Number of Sequences: 28952
Number of extensions: 147107
Number of successful extensions: 214
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1726528800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)