Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0149
         (775 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||...    28   1.3  
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    27   3.0  
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    27   3.9  
SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein L20|Sc...    26   5.2  
SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomy...    26   5.2  
SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosom...    26   5.2  
SPCC126.14 |prp18||U5 snRNP-associated protein Prp18|Schizosacch...    26   6.9  
SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|ch...    26   6.9  

>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 923

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +1

Query: 604 LDRYHTDPNVFVR*LSRISADTSIC 678
           L+RYH   N+F++ L +     S+C
Sbjct: 706 LERYHASANIFIQMLRKTDVSNSVC 730


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +2

Query: 371 LPIRNFSQIYFIVIN*TSMGNITPTHFQEGTVILFVGAI 487
           LPI+  S + F++I+ T +G    T FQ    +  +GA+
Sbjct: 342 LPIKPLSSLLFVLISFTCIGLYVRTAFQNPGYVDKIGAV 380


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1428

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 13/55 (23%), Positives = 29/55 (52%)
 Frame = +2

Query: 575 FQ*NQEYLIVLIDIIRIQMCLYVSCQEFQQIRLSVG*X*NYFLNHSKHTRIMFKR 739
           F    +Y+ V + ++R+Q+    + +EF  + L +    + +L  SK   I+F++
Sbjct: 296 FDLTSQYVKVKLKMLRLQIANKKNSEEFSTLNLQLESITSQYLFSSKEAEIVFRK 350


>SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein
           L20|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 471 YLLALLEPDLPFPXPQQRSGL 533
           Y+  LL P L FP P +R+G+
Sbjct: 138 YVKQLLNPHLKFPLPHRRTGV 158


>SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 274

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 392 VKSSLLVDKNPKKYSCDLKKSHKRKSV 312
           ++   L  +  K+   DL+KSHKRKSV
Sbjct: 138 IEEGELTSEEEKEPIQDLRKSHKRKSV 164


>SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosomal
           protein L20a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 471 YLLALLEPDLPFPXPQQRSGL 533
           Y+  LL P L FP P +R+G+
Sbjct: 138 YVKQLLNPHLKFPLPHRRTGV 158


>SPCC126.14 |prp18||U5 snRNP-associated protein
           Prp18|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 343

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +1

Query: 307 LKTDLRLWDFLRSQEYFFGFLSTNKELFTNLFHSNKLDID 426
           L+  +R+WD   S +    F S+  ++   +F   K D+D
Sbjct: 198 LQHGIRIWDNFLSSKSINSFESSESQMQLKIFRQAKQDLD 237


>SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 775

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 331 DFLRSQEYFFGFLSTNKELFTNLFHSN 411
           +FLR  E +    S NKEL +NL  S+
Sbjct: 681 EFLRKMEVYNNQFSKNKELCSNLLSSS 707


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,953,893
Number of Sequences: 5004
Number of extensions: 59344
Number of successful extensions: 158
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)