Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0149
         (775 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40840| Best HMM Match : ABC-3 (HMM E-Value=2.4)                     29   5.5  
SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  

>SB_40840| Best HMM Match : ABC-3 (HMM E-Value=2.4)
          Length = 235

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -3

Query: 122 SLNVXPCSVITLELVNLQASSEKSVCTSFEESI 24
           +LNV  CS+I L LV L  + +   C+ F+ S+
Sbjct: 43  NLNVPTCSLIDLSLVALSVNLDVPTCSLFDLSL 75


>SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1480

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 322 RLWDFLRSQEYFFGFLSTNKELFTNLFH 405
           RLWD  R+  Y+  F++ N  +FT  +H
Sbjct: 403 RLWDMRRTDTYYHQFMAHNGPVFTLDWH 430


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,003,606
Number of Sequences: 59808
Number of extensions: 402816
Number of successful extensions: 748
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2107953584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)