Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0149
         (775 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23172-6|AAV58869.1|  484|Caenorhabditis elegans Hypothetical pr...    32   0.40 
U23172-5|AAC46527.1|  510|Caenorhabditis elegans Hypothetical pr...    32   0.40 
U23172-4|AAL02494.1|  521|Caenorhabditis elegans Hypothetical pr...    32   0.40 
Z93396-3|CAB07712.1|  597|Caenorhabditis elegans Hypothetical pr...    30   2.1  
Z95621-1|CAB09130.1|  357|Caenorhabditis elegans Hypothetical pr...    29   4.9  

>U23172-6|AAV58869.1|  484|Caenorhabditis elegans Hypothetical
           protein F25B5.6c protein.
          Length = 484

 Score = 32.3 bits (70), Expect = 0.40
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -3

Query: 146 PQCFKYLFSLNVXPCSVITLELVNLQASSEKSVCTSFEESI 24
           PQC KYL SLN+    +  L ++++  +  K    +F ESI
Sbjct: 43  PQCRKYLESLNISAEDLNALNIIHVSGTKGKGSACAFVESI 83


>U23172-5|AAC46527.1|  510|Caenorhabditis elegans Hypothetical
           protein F25B5.6a protein.
          Length = 510

 Score = 32.3 bits (70), Expect = 0.40
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -3

Query: 146 PQCFKYLFSLNVXPCSVITLELVNLQASSEKSVCTSFEESI 24
           PQC KYL SLN+    +  L ++++  +  K    +F ESI
Sbjct: 69  PQCRKYLESLNISAEDLNALNIIHVSGTKGKGSACAFVESI 109


>U23172-4|AAL02494.1|  521|Caenorhabditis elegans Hypothetical
           protein F25B5.6b protein.
          Length = 521

 Score = 32.3 bits (70), Expect = 0.40
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -3

Query: 146 PQCFKYLFSLNVXPCSVITLELVNLQASSEKSVCTSFEESI 24
           PQC KYL SLN+    +  L ++++  +  K    +F ESI
Sbjct: 80  PQCRKYLESLNISAEDLNALNIIHVSGTKGKGSACAFVESI 120


>Z93396-3|CAB07712.1|  597|Caenorhabditis elegans Hypothetical
           protein ZC15.5 protein.
          Length = 597

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 20/66 (30%), Positives = 30/66 (45%)
 Frame = +2

Query: 254 YFSQFSLMSVRPKILCLR*RQICVYGTF*DRKNIFLDFYLPIRNFSQIYFIVIN*TSMGN 433
           +F   S ++  P++L  R   +    TF  RK IFL+F++P R     Y       S G+
Sbjct: 158 FFGTLSPVAKTPRLLNKRSYVVLKLFTF-QRKTIFLEFWVPPRKLLGTYIASTTQMSPGS 216

Query: 434 ITPTHF 451
               HF
Sbjct: 217 RISYHF 222


>Z95621-1|CAB09130.1|  357|Caenorhabditis elegans Hypothetical
           protein VC27A7L.1 protein.
          Length = 357

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 282 FGLKFFAFVKDRFAFMGLFKIARIFFWI 365
           F +KFF F+ +R  F+ +  +  I FW+
Sbjct: 33  FQVKFFRFIDNRSNFIAIIYVGFIHFWV 60


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,937,259
Number of Sequences: 27780
Number of extensions: 317413
Number of successful extensions: 702
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)