Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0148
         (337 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    22   1.7  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    21   5.3  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    21   5.3  
DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex det...    20   7.0  
DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex det...    20   7.0  
DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex det...    20   7.0  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    20   7.0  
DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex det...    20   7.0  
DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex det...    20   7.0  
DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex det...    20   7.0  

>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 22.2 bits (45), Expect = 1.7
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +1

Query: 82  IITIQPNNRWRQQRDLHNNYNT*SNY 159
           I ++  N ++    + +NNYN  +NY
Sbjct: 315 ISSLSNNYKYSNYNNYNNNYNNYNNY 340



 Score = 20.2 bits (40), Expect = 7.0
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +1

Query: 100 NNRWRQQRDLHNNYNT*SNY 159
           NN +    + +NNYN  +NY
Sbjct: 331 NNNYNNYNNYNNNYN--NNY 348


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 20.6 bits (41), Expect = 5.3
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -3

Query: 203 NNPNINNKLSYN 168
           NN N N KL YN
Sbjct: 104 NNNNYNKKLYYN 115


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 20.6 bits (41), Expect = 5.3
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -3

Query: 203 NNPNINNKLSYN 168
           NN N N KL YN
Sbjct: 104 NNNNYNKKLYYN 115


>DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.2 bits (40), Expect = 7.0
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +1

Query: 82  IITIQPNNRWRQQRDLHNNYNT 147
           I ++  N ++    + +NNYNT
Sbjct: 82  ISSLSNNYKYSNYNNYNNNYNT 103


>DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.2 bits (40), Expect = 7.0
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +1

Query: 82  IITIQPNNRWRQQRDLHNNYNT 147
           I ++  N ++    + +NNYNT
Sbjct: 82  ISSLSNNYKYSNYNNYNNNYNT 103


>DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.2 bits (40), Expect = 7.0
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +1

Query: 82  IITIQPNNRWRQQRDLHNNYNT 147
           I ++  N ++    + +NNYNT
Sbjct: 82  ISSLSNNYKYSNYNNYNNNYNT 103


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.2 bits (40), Expect = 7.0
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +1

Query: 82  IITIQPNNRWRQQRDLHNNYNT 147
           I ++  N ++    + +NNYNT
Sbjct: 82  ISSLSNNYKYSNYNNYNNNYNT 103


>DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.2 bits (40), Expect = 7.0
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +1

Query: 82  IITIQPNNRWRQQRDLHNNYNT 147
           I ++  N ++    + +NNYNT
Sbjct: 82  ISSLSNNYKYSNYNNYNNNYNT 103


>DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.2 bits (40), Expect = 7.0
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +1

Query: 82  IITIQPNNRWRQQRDLHNNYNT 147
           I ++  N ++    + +NNYNT
Sbjct: 82  ISSLSNNYKYSNYNNYNNNYNT 103


>DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.2 bits (40), Expect = 7.0
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +1

Query: 82  IITIQPNNRWRQQRDLHNNYNT 147
           I ++  N ++    + +NNYNT
Sbjct: 82  ISSLSNNYKYSNYNNYNNNYNT 103


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 60,909
Number of Sequences: 438
Number of extensions: 1050
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7591023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)