Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0146
         (809 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    32   0.11 
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    29   1.0  
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos...    28   1.4  
SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomy...    28   1.8  
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|...    28   1.8  
SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces po...    27   4.2  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    27   4.2  
SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces...    25   9.6  
SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit Ssr2|Schizosa...    25   9.6  
SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyce...    25   9.6  

>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 31.9 bits (69), Expect = 0.11
 Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
 Frame = +3

Query: 309 SSTHLRAYSVARSQTW*SATNGANTGAQSESTTNSATTEISYANTHTGITEWAP---SIN 479
           SST L + S A S T  S ++   +   S + T++++T ++  N+ T  +  +    S+N
Sbjct: 320 SSTPLSSVSSANSTTATSTSSTPLSSVNSTTATSASSTPLTSVNSTTATSASSTPLTSVN 379

Query: 480 RSLTRSASYTAFTNSNT 530
            +   SAS T  T++N+
Sbjct: 380 STSATSASSTPLTSANS 396



 Score = 28.3 bits (60), Expect = 1.4
 Identities = 15/72 (20%), Positives = 39/72 (54%)
 Frame = +3

Query: 309 SSTHLRAYSVARSQTW*SATNGANTGAQSESTTNSATTEISYANTHTGITEWAPSINRSL 488
           +S+ L + S   S    S+TN   +   + S T+S+ +  + +N+ T  +  + S+N + 
Sbjct: 145 TSSSLASSSTTSSSLASSSTNSTTSATPTSSATSSSLSSTAASNSATSSSLASSSLNSTT 204

Query: 489 TRSASYTAFTNS 524
           + +A+ ++ +++
Sbjct: 205 SATATSSSLSST 216



 Score = 26.2 bits (55), Expect = 5.5
 Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
 Frame = +3

Query: 333 SVARSQTW*SATNGANTGAQSESTTNSATTEISYANTHTGITEWAP---SINRSLTRSAS 503
           S   S T  SA++   +   S + T++++T ++  N+ T  +  +    S+N +   SAS
Sbjct: 442 SSVNSTTATSASSTPLSSVNSTTATSASSTPLTSVNSTTATSASSTPLTSVNSTSATSAS 501

Query: 504 YTAFTNSNT 530
            T  T++N+
Sbjct: 502 STPLTSANS 510



 Score = 25.4 bits (53), Expect = 9.6
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +3

Query: 360 SATNGANTGAQSESTTNSATTEISYANTHTGITEWAPSINRSLTRSASYTA 512
           SAT+ +   +   STT++  T  S ++T +  T    S + +   SAS T+
Sbjct: 221 SATSSSLASSSLNSTTSATATSSSISSTVSSSTPLTSSNSTTAATSASATS 271


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
 Frame = +3

Query: 363 ATNGANTGAQSESTTNSATTEIS--YANTHTGITEWAPSINRSLTRSASY-TAFTNSNT 530
           +TN   TG  S +TT SAT   S  Y+N+    T    S++   + S+SY T  T SNT
Sbjct: 272 STNLTTTG--STTTTGSATVSSSPFYSNSSVIPTSVPSSVSSFTSSSSSYTTTLTASNT 328


>SPAC2E1P3.05c |||fungal cellulose binding domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 16/54 (29%), Positives = 29/54 (53%)
 Frame = +3

Query: 360 SATNGANTGAQSESTTNSATTEISYANTHTGITEWAPSINRSLTRSASYTAFTN 521
           S+   + T   S S+  S+TT  S + +    T   PSI+ +++ S S ++FT+
Sbjct: 115 SSAASSTTSTTSSSSLVSSTTLTSSSPSAVSSTTSIPSISSTISSSVSTSSFTS 168


>SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 510

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 15/57 (26%), Positives = 38/57 (66%)
 Frame = +3

Query: 360 SATNGANTGAQSESTTNSATTEISYANTHTGITEWAPSINRSLTRSASYTAFTNSNT 530
           S+T+G+++G+ S STT S+++  S ++  +G +  + S   S + S+++++ ++S +
Sbjct: 425 SSTSGSSSGSSSASTTASSSSVSSGSSISSGSSSMSTSYT-SASGSSAHSSGSSSGS 480


>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 530

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 15/51 (29%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
 Frame = +3

Query: 381 TGAQSESTTNSATTEI--SYANTHTGITEWAPSINRSLTRSASYTAFTNSN 527
           T ++S S+  +++TE+  SY+ + T +T   P+ +   T ++SY A  +S+
Sbjct: 153 TSSESSSSYPASSTEVASSYSASSTEVTSSYPASSEVATSTSSYVAPVSSS 203


>SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 296

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 560 CIVGWLCSLSCVRVCEGC 507
           C+ GWLC  + + VC+ C
Sbjct: 71  CLNGWLCESNNILVCDVC 88


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
 Frame = +3

Query: 360  SATNGANTGAQ--SESTTNSATTEISYANTHTGITEWAPSINRSLTRSASYTAFTNSNT* 533
            S +N  +T     S S+ N  TT  S   T T  T   PS+  S++ ++SY A + S+  
Sbjct: 893  STSNSGSTSYSIPSSSSRNEGTTSYSSNITVTSST-LKPSLTSSVSTASSYIASSASSNT 951

Query: 534  Q*T*PAYYAS 563
              T P  ++S
Sbjct: 952  LSTEPKTFSS 961


>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 497

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = -1

Query: 524 RVCEGCITCRSGERAVNTWSPFCNPC 447
           R   GC+TCR      +   PFC  C
Sbjct: 31  RTKTGCLTCRRRRIKCDETKPFCLNC 56


>SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit
           Ssr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 503

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = +2

Query: 374 CKYRCSIRIYYKLSNNRNIICKYPYRDYRMGSKY 475
           C   CS   Y+ L N +  IC   Y+  R  S +
Sbjct: 196 CGVNCSQTWYHNLKNKKYDICPNCYKQGRFSSSF 229


>SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = +3

Query: 258 WHAVC-PVAGRRHQFAAHSSTHLRAYSVARSQTW*SATNGANTGAQSESTTNSATTEISY 434
           W+ VC P AG R  F   S       +V   +     ++G+   + ++ TTNS+TT  S 
Sbjct: 62  WYEVCNPAAGTRG-FVPVSHFEEIGKTVKSERD----SDGSGQISFTDLTTNSSTTRSSI 116

Query: 435 ANTHTG 452
           +  H+G
Sbjct: 117 SELHSG 122


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,069,985
Number of Sequences: 5004
Number of extensions: 61117
Number of successful extensions: 151
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)