Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0146
         (809 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0147 + 21195222-21195377,21195471-21195522,21196842-212043...    30   2.5  
03_02_0884 + 12160453-12160518,12160598-12160696,12163223-121633...    29   4.4  
12_01_0588 + 4795620-4796093,4796124-4797476,4797575-4797827,479...    28   7.6  
04_04_1683 + 35345506-35345581,35346171-35346343,35346706-353467...    28   7.6  
03_02_0475 + 8760948-8760987,8761043-8761181,8761268-8761358,876...    28   7.6  

>09_06_0147 + 21195222-21195377,21195471-21195522,21196842-21204362,
            21204453-21205031,21205176-21205484,21205638-21205718,
            21205971-21206279,21207430-21207816,21207964-21208767,
            21208856-21209218,21209437-21209667,21209934-21210278,
            21210494-21210712,21210759-21210815,21210978-21211322,
            21211538-21211756,21211803-21211859,21212022-21212366,
            21212584-21212814,21213100-21213458
          Length = 4322

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 19/54 (35%), Positives = 25/54 (46%)
 Frame = +3

Query: 333  SVARSQTW*SATNGANTGAQSESTTNSATTEISYANTHTGITEWAPSINRSLTR 494
            SV  SQ    + NG+ TGA S  T  S + E S       I++  P  N S T+
Sbjct: 4242 SVTASQVLGRSENGSGTGALSGETVPSNSQENSEGTPSEEISKQQPQTNMSSTK 4295


>03_02_0884 +
           12160453-12160518,12160598-12160696,12163223-12163357,
           12163841-12163891,12164070-12164693,12164779-12164952,
           12165047-12165272,12165368-12165459,12165551-12165649,
           12165743-12165791,12165878-12165931,12166235-12166290,
           12166367-12166438,12166520-12166615,12167069-12167418,
           12167508-12167679,12167777-12167875,12167959-12168090,
           12168185-12168288,12168369-12168401,12168744-12168930,
           12169016-12169024
          Length = 992

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 100 YLRHWIVYFLHIKYKHKTSLHSSHSMIFTY 11
           Y RHW V+ +H+K +    L S H   F Y
Sbjct: 845 YKRHWFVFIVHLKDEMFVFLDSLHEEGFEY 874


>12_01_0588 +
           4795620-4796093,4796124-4797476,4797575-4797827,
           4797989-4798108,4798542-4798564,4798734-4798841
          Length = 776

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +2

Query: 287 AAPVCSPLLNSSPCL*RC 340
           A P+C P+ +SSPC  RC
Sbjct: 679 AKPMCCPVQDSSPCFGRC 696


>04_04_1683 +
           35345506-35345581,35346171-35346343,35346706-35346739,
           35346919-35347055,35347356-35347422,35347645-35347744,
           35348375-35348538,35349023-35349069,35349177-35349224,
           35349463-35349976,35350190-35350278,35350472-35350549,
           35350972-35351019
          Length = 524

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +1

Query: 508 QPSQTRT-HDSEHNQPTMHQVFITPNQQIIINGPDKA 615
           +P QT + H+ EH QP MH+       QI + GP++A
Sbjct: 394 RPQQTSSGHEGEHGQPGMHR---DAGIQINLAGPEQA 427


>03_02_0475 +
           8760948-8760987,8761043-8761181,8761268-8761358,
           8761436-8761499,8762837-8762942,8763018-8763072,
           8764377-8764430,8765223-8765312,8765462-8765518
          Length = 231

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +2

Query: 227 VWWGVSLWARVACSMSGRWTAA 292
           VW G+S ++RVA S+ G W+ A
Sbjct: 46  VWPGLSCFSRVATSLRGGWSGA 67


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,218,389
Number of Sequences: 37544
Number of extensions: 413947
Number of successful extensions: 1137
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1088
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1137
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)