Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0146
         (809 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44205| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.16 
SB_20373| Best HMM Match : RDD (HMM E-Value=6.8e-12)                   30   2.6  
SB_7241| Best HMM Match : Cyclin_N (HMM E-Value=2.4e-20)               30   2.6  
SB_5006| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.6  
SB_33568| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_3801| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.4  
SB_46110| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  

>SB_44205| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 611

 Score = 33.9 bits (74), Expect = 0.16
 Identities = 21/76 (27%), Positives = 40/76 (52%)
 Frame = +3

Query: 303 AHSSTHLRAYSVARSQTW*SATNGANTGAQSESTTNSATTEISYANTHTGITEWAPSINR 482
           A++S++   Y+   + T+  A   ANT A + + T++ T+  + ANT    T    S + 
Sbjct: 114 ANTSSYTIPYASTDASTYTIANTSANTSANTSANTSANTSANTSANTSAN-TSTDTSTDT 172

Query: 483 SLTRSASYTAFTNSNT 530
           S    A+ + +T++NT
Sbjct: 173 SPDTRANTSTYTSANT 188


>SB_20373| Best HMM Match : RDD (HMM E-Value=6.8e-12)
          Length = 434

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +3

Query: 372 GANTGAQSESTTNSATTEISYANTHTGITEWAPSINRSLTRSASYTAFTNS 524
           G   G+Q ++T +S  T +S +       E +PS N  L  S SY  +  S
Sbjct: 131 GETPGSQDKNTMDSDKTGLSSSTEENSTPESSPSQNNELWNSMSYWYYMQS 181


>SB_7241| Best HMM Match : Cyclin_N (HMM E-Value=2.4e-20)
          Length = 279

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -2

Query: 115 RNSSRYLRHWIVYFLHIKYKHKTSLHSSHSMI 20
           + +S YLR ++ YFL I ++  T L  S S+I
Sbjct: 188 KKTSTYLRKYVYYFLEISFQDHTFLSFSPSLI 219


>SB_5006| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 657

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -3

Query: 348 DSGQRYRHGDE--LRSGLQTGAAVQRPDILHATLAHSDTPHHT 226
           D  QR RH DE  L   L T +  +   I+  TLA  D PHH+
Sbjct: 249 DENQR-RHEDEVYLAHALVTSSVEEGKRIIQDTLAQFDNPHHS 290


>SB_33568| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1555

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 12/30 (40%), Positives = 13/30 (43%)
 Frame = -1

Query: 536 LSCVRVCEGCITCRSGERAVNTWSPFCNPC 447
           L  VR   GC  C     A+  WS  C PC
Sbjct: 248 LYAVRTDFGCCRCSERVGAIRRWSATCRPC 277


>SB_3801| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 421

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +3

Query: 129 GGCTFRDHWRAATCYENSTECVEQWKLF 212
           GGC+   +WR  +C  + TE ++++K +
Sbjct: 236 GGCSSYFYWRTRSCKPDCTEIIKKYKFY 263


>SB_46110| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 984

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -1

Query: 554 VGWLCSLSCVRVCEGCITCRSGERAV 477
           + W+C+  C  +  G + C  G RAV
Sbjct: 815 ISWICTKVCFALLRGALVCLRGSRAV 840


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,569,828
Number of Sequences: 59808
Number of extensions: 500766
Number of successful extensions: 1364
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1357
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2251677692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)