Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0146
         (809 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41994-9|AAK31523.1|  786|Caenorhabditis elegans Hypothetical pr...    34   0.14 
U46673-4|AAC48152.2| 1535|Caenorhabditis elegans Laminin related...    30   1.7  
U53344-4|AAA96225.2|  575|Caenorhabditis elegans Hypothetical pr...    30   2.3  
U21308-2|AAB93313.3|  507|Caenorhabditis elegans Hypothetical pr...    29   3.0  
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p...    29   5.2  
U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated p...    28   9.1  

>U41994-9|AAK31523.1|  786|Caenorhabditis elegans Hypothetical
           protein F59A6.3 protein.
          Length = 786

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 16/49 (32%), Positives = 30/49 (61%)
 Frame = +3

Query: 378 NTGAQSESTTNSATTEISYANTHTGITEWAPSINRSLTRSASYTAFTNS 524
           ++   S+S+T+ +T  +SY NT++ IT   PS+N + T S + +   +S
Sbjct: 683 SSSGSSDSSTSPSTFTVSYNNTNSSITCIEPSLNLTYTSSPTSSQIKSS 731


>U46673-4|AAC48152.2| 1535|Caenorhabditis elegans Laminin related.
           see also lmb-protein 2 protein.
          Length = 1535

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = +3

Query: 264 AVCPVAGRRHQFAAHSSTHLRAYSVARSQTW*SATNGANTGAQSESTTN 410
           +VC     RH+  +H + +L  ++V  ++TW   ++    G Q  +TTN
Sbjct: 74  SVCETCDDRHEGFSHPAKYLTDFNVGNNETW-WQSDTMQEGQQYPTTTN 121


>U53344-4|AAA96225.2|  575|Caenorhabditis elegans Hypothetical
           protein T07H6.5 protein.
          Length = 575

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
 Frame = +2

Query: 254 RVACSMSGRWTAAPVCSPLL--NSSPCL*RCPESNLVIRNQR----CKYRCSIRIYYKLS 415
           R+ CS S  W+  PVCSPL   N  P   R P + ++          KY C+   Y+   
Sbjct: 359 RLICSNS-TWSHVPVCSPLSCHNWPP---RVPHARILFSKSSHGSIAKYECN-NGYHPNR 413

Query: 416 NNRNIICKY 442
           NN+ I C Y
Sbjct: 414 NNQIIKCLY 422


>U21308-2|AAB93313.3|  507|Caenorhabditis elegans Hypothetical
           protein ZK1290.6 protein.
          Length = 507

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 20/80 (25%), Positives = 38/80 (47%)
 Frame = +3

Query: 282 GRRHQFAAHSSTHLRAYSVARSQTW*SATNGANTGAQSESTTNSATTEISYANTHTGITE 461
           GR    ++ SS +    S + + ++  +T   N+G  +  TT +A++  +Y+NT +  + 
Sbjct: 84  GRSFSTSSGSSGYRGLSSGSTNTSYSKSTPRTNSGYSTGKTTKTASSSRNYSNTSSTRST 143

Query: 462 WAPSINRSLTRSASYTAFTN 521
             PS +    RS   T   N
Sbjct: 144 TKPSKSSYSKRSTKSTKSLN 163


>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
            protein T19D12.1 protein.
          Length = 1844

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 18/74 (24%), Positives = 36/74 (48%)
 Frame = +3

Query: 309  SSTHLRAYSVARSQTW*SATNGANTGAQSESTTNSATTEISYANTHTGITEWAPSINRSL 488
            SST + + +V  +QT  S++   NTG+   + TN +T+  +  ++ T     + + N   
Sbjct: 1528 SSTTVGSSTVGATQTSVSSSTVPNTGSTGSTVTNPSTSSSTSGSSSTQSIPSSTAANTGS 1587

Query: 489  TRSASYTAFTNSNT 530
            + S    A T  ++
Sbjct: 1588 STSGPTVATTQGSS 1601


>U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated
            protein 68 protein.
          Length = 5079

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
 Frame = +3

Query: 291  HQFAAHSSTHLRAYSVARSQTW*SATNGANTGAQS-ESTTNSATTEISYANTHTGIT 458
            H FA  +S      +  RSQT+ S TN A  G    E      +    YA+ HT  +
Sbjct: 2490 HTFAMVASLASEVSNTRRSQTFTSGTNLAKRGLPCVEEVDTDDSKSSDYASVHTSFS 2546


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,399,005
Number of Sequences: 27780
Number of extensions: 369635
Number of successful extensions: 1001
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1000
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1987863822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)