Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0146
         (809 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g17590.1 68415.m02035 DC1 domain-containing protein contains ...    31   1.2  
At5g08310.1 68418.m00978 pentatricopeptide (PPR) repeat-containi...    28   8.4  

>At2g17590.1 68415.m02035 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 632

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +2

Query: 338 CPESNLVIRNQRCKYRCSIRIYYKLSNNRNIICKYP-YRDY 457
           C  SN  +    C  RCS  +Y KLSN    IC Y   RD+
Sbjct: 567 CNSSNTRLMCHNCDNRCSSTVYLKLSNG-IAICSYQCLRDF 606


>At5g08310.1 68418.m00978 pentatricopeptide (PPR) repeat-containing
            protein contains Pfam profile PF01535: PPR repeat
          Length = 1280

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 261  HAVCPVAGRRHQFAAHSSTHLRA 329
            H++  + G RH+F AH  TH  +
Sbjct: 1228 HSILDLDGTRHRFIAHDKTHFHS 1250


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,044,627
Number of Sequences: 28952
Number of extensions: 325593
Number of successful extensions: 806
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1843581600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)