Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0145
         (726 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1014 - 23586552-23587224,23587402-23587463,23587735-235879...    28   8.7  

>08_02_1014 -
           23586552-23587224,23587402-23587463,23587735-23587950,
           23588125-23588209,23589232-23589389,23589505-23589625,
           23590081-23590243,23590330-23590415,23590660-23590742,
           23590816-23591677,23593266-23593693
          Length = 978

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +2

Query: 188 SAENXATENTQXSLF-DGIEKFDSSQLKHTETPRRTRFRSKT 310
           S  N  +E+ +  +F D +  FD S   H E  R T  RSK+
Sbjct: 851 STRNSTSEDMERLIFGDQVSYFDGSMFGHGENGRMTYSRSKS 892


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,034,738
Number of Sequences: 37544
Number of extensions: 225067
Number of successful extensions: 379
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 379
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)