Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0145
         (726 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46525| Best HMM Match : Thymosin (HMM E-Value=0)                    31   1.3  
SB_4976| Best HMM Match : SET (HMM E-Value=0.05)                       29   5.1  
SB_33595| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_27777| Best HMM Match : WSC (HMM E-Value=0.44)                      28   8.9  

>SB_46525| Best HMM Match : Thymosin (HMM E-Value=0)
          Length = 750

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +2

Query: 173 KIXLPSAENXATENTQXSLFDGIE--KFDSSQLKHTETPRRTRFRSK 307
           K  LP A+N   E     L D  E  KFD+S+LKH ET  +    +K
Sbjct: 507 KNPLPDAQNIRAEMMPEVLPDRSEVAKFDTSKLKHVETKEKVVMPTK 553



 Score = 29.5 bits (63), Expect = 2.9
 Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
 Frame = +1

Query: 283 EKNPLPVXDAIDAENEKNRIPERXRVTXIPLS*SXRXRA-IKNPXPTXDXIEQEK 444
           EKN LP  + I  E + +  P+R  V     S         KN  PT D I  EK
Sbjct: 429 EKNTLPSDETIKQELQPDEFPDRAEVKSFEKSKLQHVETKEKNTLPTKDTIADEK 483



 Score = 29.1 bits (62), Expect = 3.8
 Identities = 18/57 (31%), Positives = 24/57 (42%)
 Frame = +2

Query: 110 PEESARRLXDHAVXXTSTPMMKIXLPSAENXATENTQXSLFDGIEKFDSSQLKHTET 280
           P+ S     DH      T   K  +PS E+   E         ++ FD S+LKH ET
Sbjct: 602 PDRSEVASFDHTKLKHVTTQEKSIMPSQEDIKEEAVDSRA--EVKSFDHSKLKHVET 656



 Score = 28.7 bits (61), Expect = 5.1
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +2

Query: 173 KIXLPSAENXATENTQXSLFDGIEKFDSSQLKHTET 280
           K  LP+ +  A E  + + F G+E F  ++LKH ET
Sbjct: 470 KNTLPTKDTIADEK-RTAPFSGVEVFQKNKLKHVET 504


>SB_4976| Best HMM Match : SET (HMM E-Value=0.05)
          Length = 296

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = +2

Query: 2   HGILYPLPHQKYIDSXWPAP*VTLPP*XTLPKVATVPE 115
           HG L  +PH K I S   +P V   P   L K +T+PE
Sbjct: 87  HGPLEWIPHSKAISSAHYSPCVASLPDGLLMKESTIPE 124


>SB_33595| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 901

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +1

Query: 235 RYREV*FEPAEAHRDSEKNPLPVXDAI-DAENEKNRIPERXRVTXIPLS 378
           ++ E+  EP++ HR+         +   D++NE   +PE+  V  IP++
Sbjct: 445 KFEELAIEPSKKHRNEASGSKTTRNVSEDSDNEFEDVPEKEGVECIPVN 493


>SB_27777| Best HMM Match : WSC (HMM E-Value=0.44)
          Length = 216

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +1

Query: 244 EV*FEPAEAHRDSEKNPLPVXDAIDAENEKNRIPERXRVTXIP 372
           EV FEP   +RDS + P P+ + +   N++N I      T +P
Sbjct: 10  EVAFEPIGCYRDSGRKPQPLTEQL--SNDRNAIDWNKWNTLMP 50


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,033,912
Number of Sequences: 59808
Number of extensions: 255472
Number of successful extensions: 565
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)