Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0145
         (726 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   2.2  
X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.           23   2.9  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   3.9  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    21   9.0  

>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = +1

Query: 565 VFAHMATLPGLWXRTATPXXIHILTMXHALRLYXASG 675
           +F H  TL   +   + P  IH+    + L  Y  SG
Sbjct: 606 LFGHNVTLANKFESLSEPLRIHVSPTTYILLKYPISG 642


>X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.
          Length = 103

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 658 GVRRXSSLVYE*XPGLLXVXI 596
           GV+R S L+YE   G+L V +
Sbjct: 43  GVKRISGLIYEETRGVLKVFL 63


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 634 LTMXHALRLYXASGRPKPI 690
           L + H LR+Y  SG  +PI
Sbjct: 141 LAICHPLRVYTISGLKRPI 159


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -1

Query: 108 TVATLGRVXQGGSVTHG 58
           TVA   R+  GGSVT G
Sbjct: 198 TVAETVRIIYGGSVTAG 214


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,630
Number of Sequences: 438
Number of extensions: 2501
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)