Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0144
         (774 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomy...    27   3.0  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    26   6.9  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   9.1  

>SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 348

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +3

Query: 630 LTLISRYSHIFNCICLLES*IIIFNIKIMVL 722
           L ++  Y H+FN + LL + +IIF  ++ ++
Sbjct: 116 LNMVHMYVHVFNILILLLAPVIIFTAEMSMM 146


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 9/32 (28%), Positives = 14/32 (43%)
 Frame = -3

Query: 154  FSTGRWGPE*APWLIETGRVQGDNIHDSTDNT 59
            F+   W P   PW   T  +  D +H+   N+
Sbjct: 1679 FAKSHWEPVIEPWTFSTTAIMKDGMHEVNINS 1710


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 369  LSISKAGSLCETFSFCTKTF 310
            +S+S+   LC  FSF T TF
Sbjct: 1531 ISLSQIDDLCNGFSFTTSTF 1550


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,223,357
Number of Sequences: 5004
Number of extensions: 67842
Number of successful extensions: 129
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)