Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0144
         (774 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1275 + 25382959-25383765,25383850-25384050,25384693-253848...    30   2.3  
01_02_0083 - 10959091-10959222,10959318-10959501,10959935-109600...    29   3.1  
04_04_0517 + 25841292-25842099,25842256-25842308                       29   4.1  
03_02_0619 + 9904405-9904586,9905315-9906764,9907320-9907509,990...    29   5.4  
01_01_0091 - 719842-720902,721042-721071,721521-722226                 29   5.4  
09_06_0275 + 21976990-21977140,21977239-21977388,21977775-219779...    28   9.5  

>07_03_1275 +
           25382959-25383765,25383850-25384050,25384693-25384888,
           25385583-25385767
          Length = 462

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +3

Query: 165 PLLIRNAQSVGSHRSVLKQP*PAWTPPKCTDVNMCC 272
           PLL  NA    ++R VL+   P W P   T V + C
Sbjct: 126 PLLETNALQYSAYREVLQADPPEWLPDSSTSVCLQC 161


>01_02_0083 -
           10959091-10959222,10959318-10959501,10959935-10960056,
           10960143-10960472
          Length = 255

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 46  RVTILCCLCCHGYCHPGPDRSLLTMEL 126
           R  IL C  CH +C P P  SLL+  +
Sbjct: 148 RFIILWCFPCHFFCFPFPPYSLLSFRI 174


>04_04_0517 + 25841292-25842099,25842256-25842308
          Length = 286

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 18/43 (41%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
 Frame = +3

Query: 228 PAWTPPKCTDVNMCCGRRR-ICTGSSPAETSSCRKRRFHTDFP 353
           P W+P   T     CG R   CT SSPA  S    RR  T  P
Sbjct: 184 PRWSPGASTGRRPTCGARGWSCTCSSPAARSRSAARRPPTCSP 226


>03_02_0619 +
           9904405-9904586,9905315-9906764,9907320-9907509,
           9909578-9910164
          Length = 802

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +3

Query: 18  SAVPKSRRGTCYDLVLSVLSWILSPW 95
           SA P+  R   +DL  +VLS IL+PW
Sbjct: 696 SAWPRPERRLLFDLANTVLSEILAPW 721


>01_01_0091 - 719842-720902,721042-721071,721521-722226
          Length = 598

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +3

Query: 234 WTPPKCTDVNMCCGR-RRICTGSSPAETSSCR 326
           W+ P  TDV + C R +R+C  SS   T+ C+
Sbjct: 202 WSAPNITDVCIDCERQQRLCGFSSQRRTAFCK 233


>09_06_0275 +
           21976990-21977140,21977239-21977388,21977775-21977951,
           21978073-21978161,21978259-21978323,21978445-21978547,
           21979042-21979152,21979306-21979374,21979558-21979614
          Length = 323

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
 Frame = +2

Query: 182 CSKCWIPPVSIKATMTGLDPTE---VY*CQHVLRPEEDLHWLESGGNVFVQKEKVSHRLP 352
           C++C +P ++ +  + G +PTE    +    VLRP          G   V KE +S +  
Sbjct: 241 CNRCKVPTINQENGILGTEPTETLLTFRSDEVLRPSHKNKRQVYFGQNLVCKESLSAKGK 300

Query: 353 ALLIDNNR 376
             +I N +
Sbjct: 301 GRIIKNKQ 308


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,869,872
Number of Sequences: 37544
Number of extensions: 490237
Number of successful extensions: 1016
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1016
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)