Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0144
         (774 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37930| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.19 
SB_38612| Best HMM Match : TSP_1 (HMM E-Value=3.3e-11)                 30   2.4  
SB_16935| Best HMM Match : Cadherin (HMM E-Value=0)                    29   5.5  
SB_6561| Best HMM Match : HEAT (HMM E-Value=0.028)                     28   7.3  
SB_24702| Best HMM Match : C1_4 (HMM E-Value=0.98)                     28   9.6  

>SB_37930| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 707

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
 Frame = +3

Query: 96  TRPVSINHGAHSGPHRPVLNKTLPLLIRNAQSVGSHRSVLKQP*PAWTPPKCTDV-NMCC 272
           T  V + H + +   + +  +T PL  +NA S  + +  LK P    T  KC    + CC
Sbjct: 3   TEKVQVEHNSPTQTEKKISKETEPLKTQNALS--ADKQALK-PYACSTCGKCFKTKSQCC 59

Query: 273 GRRRICTGSSPAETSSCRKRRFH 341
              +   G  P E   C KR  H
Sbjct: 60  RHEQGHLGERPYECDKCHKRFKH 82


>SB_38612| Best HMM Match : TSP_1 (HMM E-Value=3.3e-11)
          Length = 900

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
 Frame = +2

Query: 218 ATMTGLDPTEVY*C-----QHVLRPEEDLHWLESGGNVFVQKEKVSHRLPALLIDNNRAC 382
           AT  GLD  +   C     Q +L P +     ++ GN+         +LP  + D N+ C
Sbjct: 272 ATAGGLDAFKFSPCSREQIQAILSPNKCTELNDTPGNIVHYPSSWHDKLPGHIYDRNKQC 331

Query: 383 KYEHGGT 403
           + ++G T
Sbjct: 332 QMQYGST 338


>SB_16935| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 2204

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
 Frame = +3

Query: 228  PAWTPPKC-TDVNMCCGRRRICTGSSPAE 311
            P W+PP C  D+N C       +GSS  E
Sbjct: 1829 PGWSPPNCKADINECLSNPCNSSGSSRCE 1857


>SB_6561| Best HMM Match : HEAT (HMM E-Value=0.028)
          Length = 1444

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
 Frame = +1

Query: 88   HPGPDRSLLTME-LTLDPTGQY*TRLYPFLLEMLKVLDPTGQY*----SNHDRPGPHRSV 252
            H  P RS+ T     +DP G   TR  P +  +  V   +G +     S + R GPH   
Sbjct: 1059 HVDPLRSVYTRSGPQIDPLGSVFTRSGPHIDPLRSVYTRSGPHIDPLRSVYTRSGPHIDP 1118

Query: 253  LMSTCAAAG 279
            L S C  +G
Sbjct: 1119 LRSVCTKSG 1127


>SB_24702| Best HMM Match : C1_4 (HMM E-Value=0.98)
          Length = 221

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 246 KCTDVNMCCGRRRICTGSSPAETSSCRKRRFHT 344
           KC DV++C G      G+S AET++ + +  HT
Sbjct: 188 KC-DVHLCVGETAFVNGTSRAETTTNKLKYGHT 219


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,019,882
Number of Sequences: 59808
Number of extensions: 549120
Number of successful extensions: 1159
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1155
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2107953584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)