Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0144
         (774 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024746-10|AAF60400.2|  483|Caenorhabditis elegans Hypothetical...    33   0.30 
U28412-5|AAC46595.1|  229|Caenorhabditis elegans Hypothetical pr...    29   4.9  
U00037-5|AAA50659.1|  235|Caenorhabditis elegans Hypothetical pr...    28   6.4  

>AC024746-10|AAF60400.2|  483|Caenorhabditis elegans Hypothetical
           protein Y110A2AL.2 protein.
          Length = 483

 Score = 32.7 bits (71), Expect = 0.30
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 234 WTPPKCTDVNMCCGRRRICTGSSPAETSSCR 326
           W+     + N CCG+R +  GSS   T +CR
Sbjct: 206 WSDDVMVEGNRCCGKRDVFDGSSSNRTQTCR 236



 Score = 30.7 bits (66), Expect = 1.2
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 234 WTPPKCTDVNMCCGRRRICTGSSPAETSSCR 326
           W+     + N CC +R +  GSS   T +CR
Sbjct: 248 WSDDVMVEGNRCCAKRDVIDGSSSNRTQTCR 278



 Score = 29.9 bits (64), Expect = 2.1
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 234 WTPPKCTDVNMCCGRRRICTGSSPAETSSCR 326
           W+     + N CC +R +  GSS   T +CR
Sbjct: 332 WSDDVMIEGNRCCAKRDLIDGSSSNRTQTCR 362



 Score = 28.3 bits (60), Expect = 6.4
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +3

Query: 234 WTPPKCTDVNMCCGRRRICTGSSPAETSSCR 326
           W+     + N CC +R +  GSS     +CR
Sbjct: 122 WSDDVMVEGNRCCAKRDVFDGSSSNRNETCR 152


>U28412-5|AAC46595.1|  229|Caenorhabditis elegans Hypothetical
           protein T19C3.4 protein.
          Length = 229

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +3

Query: 51  YDLVLSVLSWILSPWTRPVSINHGAHSGPHRPVLNKTLPLLIRNAQS 191
           + L +  + W+LSPWT+  SI +     P      K +  L+ +A+S
Sbjct: 66  FQLKIVFIFWLLSPWTKGASILYRKWVHPTLNRHEKDIDALLESAKS 112


>U00037-5|AAA50659.1|  235|Caenorhabditis elegans Hypothetical
           protein T20H4.2 protein.
          Length = 235

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 16/50 (32%), Positives = 20/50 (40%)
 Frame = +3

Query: 201 HRSVLKQP*PAWTPPKCTDVNMCCGRRRICTGSSPAETSSCRKRRFHTDF 350
           H+   K+  P W   K      C     +C  SS    S CR RR  TD+
Sbjct: 58  HQKTAKRDKPMW---KEEGEISCDSESDVCNSSSSNNRSRCRDRRRRTDY 104


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,348,019
Number of Sequences: 27780
Number of extensions: 405871
Number of successful extensions: 835
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)