Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0143
         (773 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    22   6.3  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   8.3  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   8.3  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    21   8.3  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 10/47 (21%), Positives = 21/47 (44%)
 Frame = +3

Query: 468 YAQDLEKTGSVIHMPVPSSYNDVGEDASLRDHVSLVWYDRXFHVPPW 608
           Y   + +TG V +    +S+ D  +D +L   ++ +       +P W
Sbjct: 493 YVHRIGRTGRVGNKGKATSFFDEDQDRNLASDLAKILSQAKQEIPEW 539


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = -1

Query: 569 AYMVPKRGVFAHVII*RGHRHVYHRACLFKILRIPAIS 456
           AY++P+ G +   +          R CL+K+ ++P++S
Sbjct: 128 AYLIPEVGTWIRAV----------RKCLYKLWKMPSLS 155


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = -1

Query: 569 AYMVPKRGVFAHVII*RGHRHVYHRACLFKILRIPAIS 456
           AY++P+ G +   +          R CL+K+ ++P++S
Sbjct: 128 AYLIPEVGTWIRAV----------RKCLYKLWKMPSLS 155


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 16/53 (30%), Positives = 20/53 (37%), Gaps = 5/53 (9%)
 Frame = +3

Query: 330 YKRKLPSNGGALYPRATETRDL-----RTLXGIWSFRPSPADPEFGYRNGWYA 473
           Y+    S  G  +   T T D      R   G + FRP   +   GY  G YA
Sbjct: 41  YQHHFNSPAGNAHTGPTGTHDAGFPSPRGALGAYPFRPMHQNSYTGYHLGSYA 93


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,235
Number of Sequences: 336
Number of extensions: 3541
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20857569
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)