Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0143
         (773 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC162.10 |ppk33||serine/threonine protein kinase Ppk33 |Schizo...    27   3.9  
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M...    27   3.9  
SPBC18H10.15 |ppk23||serine/threonine protein kinase Ppk23|Schiz...    26   6.9  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    25   9.1  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    25   9.1  
SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase ...    25   9.1  

>SPCC162.10 |ppk33||serine/threonine protein kinase Ppk33
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 338

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -2

Query: 343 NFLLYNWLISFELDDSGTTAIVTDTMHISRSAK 245
           N LL NW+ + E + + +   ++  +HISR  K
Sbjct: 233 NHLLINWIRASEEEKASSADRLSSALHISRDKK 265


>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1317

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = -2

Query: 316 SFELDDSGTTAIVTDTMHISRSAKANLGFIMFNKTFLASEN*LNLSF 176
           SF LDDS T +I      +   AKANL    F ++ ++ E  LN  +
Sbjct: 546 SFTLDDSNTESIKKRFDSLKEEAKANLEEQGFTESQISYELFLNCRY 592


>SPBC18H10.15 |ppk23||serine/threonine protein kinase
           Ppk23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 398

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 264 CIVSVTIAVVPLSSSSNEINQLYK 335
           CI +  I   PL S  +E++QLYK
Sbjct: 262 CIFAEMITRTPLFSGKSELDQLYK 285


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = -3

Query: 552  ERRLRPRHYMKRAQACVSQSLSFQDLAHTSHFY 454
            +R L  R + K    C+ + L F++  H +H++
Sbjct: 978  QRDLPYRIFPKATYQCIQKPLGFRNYRHIAHYF 1010


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = -3

Query: 552  ERRLRPRHYMKRAQACVSQSLSFQDLAHTSHFY 454
            +R L  R + K    C+ + L F++  H +H++
Sbjct: 978  QRDLPYRIFPKATYQCIQKPLGFRNYRHIAHYF 1010


>SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase
           Ppk6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -1

Query: 194 LIES*FYYSNLVTRDIYLFF*RFRIL 117
           L ES   YS+L+T+DI L F  F+++
Sbjct: 346 LFESMLGYSDLLTKDISLIFPDFKLV 371


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,920,713
Number of Sequences: 5004
Number of extensions: 58506
Number of successful extensions: 130
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)