Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0143
         (773 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0136 + 26174965-26175849,26176965-26177030,26177124-261772...    33   0.25 
01_06_1569 - 38304077-38304873,38304956-38305498,38305582-38305708     31   1.3  
05_06_0135 + 25921970-25922190,25922662-25922692,25924979-25925578     30   2.3  
02_02_0270 + 8431503-8431830,8431961-8432149,8434288-8434412,843...    30   2.3  
09_04_0569 + 18600750-18602117                                         29   5.4  

>02_05_0136 +
           26174965-26175849,26176965-26177030,26177124-26177258,
           26177369-26177434,26177516-26177701,26177777-26177863,
           26177985-26178098,26178174-26178298,26178375-26178483,
           26179298-26179423,26179511-26179831,26180146-26180269,
           26180405-26180529
          Length = 822

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 15/55 (27%), Positives = 30/55 (54%)
 Frame = +3

Query: 249 ALLLICIVSVTIAVVPLSSSSNEINQLYKRKLPSNGGALYPRATETRDLRTLXGI 413
           AL+ + +++V +  +P+S S +   QL  RK  ++GGA    +T+      + G+
Sbjct: 297 ALIYVVLIAVVLQRLPISFSQHSAGQLRNRKNSNSGGAKVSESTDIVTFADVAGV 351


>01_06_1569 - 38304077-38304873,38304956-38305498,38305582-38305708
          Length = 488

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -1

Query: 506 VYHRACLFKILRIPAISIAEFWVGRRWPKTPY 411
           V H    +++   P  +  E W  +RWP++PY
Sbjct: 339 VVHLVGAYQVFCQPLFAFVEKWAAQRWPESPY 370


>05_06_0135 + 25921970-25922190,25922662-25922692,25924979-25925578
          Length = 283

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
 Frame = +3

Query: 213 VLLNMIKPRFAFALLLICIVS---VTIAVVPLSSSSNEINQLYKRKLPSNGGALYPRATE 383
           +++N+  P  +  L  I +V    V + +V   + +  I+ L  R L      LYP+ATE
Sbjct: 205 MMVNITDPAGSTLLEAIVVVPDDFVQVCLVNTGTGTPFISGLDLRPLKKK---LYPQATE 261

Query: 384 TRDLRTLXGIWSFRPS 431
           T+ L +L G W F P+
Sbjct: 262 TQGL-SLFGRWKFGPT 276


>02_02_0270 +
           8431503-8431830,8431961-8432149,8434288-8434412,
           8434527-8434703,8434798-8434871,8434978-8435713
          Length = 542

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 13/50 (26%), Positives = 27/50 (54%)
 Frame = -3

Query: 624 VSPSATTAERGTSCRTTPSLHGPEERRLRPRHYMKRAQACVSQSLSFQDL 475
           V P+     +GT   T+   + P   RL+P  +M +++A  + ++S Q++
Sbjct: 259 VDPTGGVLTKGTHSLTSSPDNAPTSGRLKPMRFMSKSKAKAAPTISNQNM 308


>09_04_0569 + 18600750-18602117
          Length = 455

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
 Frame = -3

Query: 630 PVVSPSATTAERGTSCRTT----PSLHGPEERRLRPRHYMKRAQACVSQSLSFQDLAHTS 463
           P VSPSA+T+   +SC  T    P L G    +L  R    R+++ V+ + S       +
Sbjct: 179 PPVSPSASTSTSSSSCSATSSPPPQLQGHGRSQL--RRIFARSESSVAATTSTSSPGQYT 236

Query: 462 HFYSRILGRQAMAENSISH 406
           H  +  L R      +  H
Sbjct: 237 HNLAWFLKRSDGGGGAADH 255


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,928,999
Number of Sequences: 37544
Number of extensions: 397172
Number of successful extensions: 1003
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1003
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)