Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0143
(773 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23296| Best HMM Match : Glyco_hydro_2_N (HMM E-Value=4.2e-24) 105 3e-23
SB_37881| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 3e-05
SB_14730| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.001
SB_41459| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.11
SB_46152| Best HMM Match : DUF241 (HMM E-Value=0.62) 30 2.4
SB_24673| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_41936| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.6
SB_39714| Best HMM Match : Lipin_N (HMM E-Value=0) 28 9.6
SB_20594| Best HMM Match : rve (HMM E-Value=2.6e-11) 28 9.6
SB_4829| Best HMM Match : DsrH (HMM E-Value=4.4) 28 9.6
>SB_23296| Best HMM Match : Glyco_hydro_2_N (HMM E-Value=4.2e-24)
Length = 201
Score = 105 bits (253), Expect = 3e-23
Identities = 45/107 (42%), Positives = 68/107 (63%), Gaps = 1/107 (0%)
Frame = +3
Query: 357 GALYPRATETRDLRTLXGIWSFR-PSPADPEFGYRNGWYAQDLEKTGSVIHMPVPSSYND 533
G L+PR +E+R+++ L G+W+FR + D E G+ W+++ LEK+G VI MPVP+SYND
Sbjct: 64 GMLFPRESESREIKDLSGLWNFRVDNSKDKEAGFAESWFSRPLEKSGEVIPMPVPASYND 123
Query: 534 VGEDASLRDHVSLVWYDRXFHVPPWWQTAKQRVWLRFSSVHYAAEVF 674
+ +D +RD WYD +VP W + RV LRF +Y +V+
Sbjct: 124 ITQDKGIRDFRGWAWYDMQTYVPSRWNDSNTRVVLRFEGANYYTKVW 170
>SB_37881| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 134
Score = 46.0 bits (104), Expect = 3e-05
Identities = 19/45 (42%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Frame = +3
Query: 357 GALYPRATETRDLRTLXGIWSFR-PSPADPEFGYRNGWYAQDLEK 488
G L+PR +E+R+L+ L G+W+FR S + G++ WY++ LEK
Sbjct: 28 GMLFPRESESRELKDLNGLWNFRVDSSKTRDAGFQEKWYSKPLEK 72
>SB_14730| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 63
Score = 41.1 bits (92), Expect = 0.001
Identities = 17/43 (39%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Frame = +3
Query: 357 GALYPRATETRDLRTLXGIWSFRPSPADPEF-GYRNGWYAQDL 482
G L+PRA+E+R++++L GIW FR + G+ + W+A L
Sbjct: 19 GMLFPRASESREIKSLDGIWDFRADDSPQRSKGFDDMWFANPL 61
>SB_41459| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1675
Score = 34.3 bits (75), Expect = 0.11
Identities = 19/54 (35%), Positives = 29/54 (53%)
Frame = -3
Query: 573 PSLHGPEERRLRPRHYMKRAQACVSQSLSFQDLAHTSHFYSRILGRQAMAENSI 412
P HGP RR RPRH + A ++S+S DL Y++ R+++ NS+
Sbjct: 84 PRFHGPSTRRWRPRHRLTIANYPYTRSVSCVDLP----IYAKWSRRRSITSNSL 133
>SB_46152| Best HMM Match : DUF241 (HMM E-Value=0.62)
Length = 1110
Score = 29.9 bits (64), Expect = 2.4
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +3
Query: 495 SVIHMPVPSSYN-DVGEDASLRDHVSLVWYDRXFHVPPWWQTAKQRVWLRFSSVHYAAEV 671
S I VP S + ++G +ASL++ + F +PP ++T R L HYA E+
Sbjct: 11 STIESSVPPSPSLNLGSEASLKEQAEI-----SFKLPPTYETLVSRAQLAAEFHHYALEI 65
>SB_24673| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 732
Score = 28.7 bits (61), Expect = 5.5
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = -3
Query: 615 SATTAERGTSCRTTPSLHGPEERRLRPRHYMKRAQACVSQSLSFQDLAHTSHFYSRILGR 436
S T + G C TP + G R RP +++ + + LS + L HTS +G
Sbjct: 503 SPTFRKAGGVCTWTPGVVGQLHREKRPVRSLRKMASEDNTCLSSRMLCHTSRIQCYKVGS 562
Query: 435 QAMAENS-ISHXG 400
S ++H G
Sbjct: 563 SVTHVGSGVTHVG 575
>SB_41936| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 850
Score = 27.9 bits (59), Expect = 9.6
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Frame = -3
Query: 630 PVVSPSATTAERGTS--CRTTPSL--HGPEERRLRPRHYMKRAQA-CVSQSLS 487
P+ P + GT C TT L HG E RR P H+ +A A C + L+
Sbjct: 723 PLTWPKVLMVDDGTEFKCATTKLLTDHGVEVRRAEPGHHRSQAFAECFHRRLA 775
>SB_39714| Best HMM Match : Lipin_N (HMM E-Value=0)
Length = 1311
Score = 27.9 bits (59), Expect = 9.6
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +3
Query: 297 LSSSSNEINQLYKRKLPSNGGALYPRATETRDLR 398
L+S +EI +LY + + GGA YP A RDL+
Sbjct: 1140 LTSVDDEIARLYLNQ--ALGGACYPNAIRKRDLK 1171
>SB_20594| Best HMM Match : rve (HMM E-Value=2.6e-11)
Length = 207
Score = 27.9 bits (59), Expect = 9.6
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Frame = -3
Query: 630 PVVSPSATTAERGTSCR--TTPSL--HGPEERRLRPRHYMKRAQA 508
P+ P + GT C+ TT L HG E RR P H+ +A A
Sbjct: 103 PLTWPKVLMVDDGTECKGATTKLLTDHGVEVRRAGPGHHRSQAIA 147
>SB_4829| Best HMM Match : DsrH (HMM E-Value=4.4)
Length = 190
Score = 27.9 bits (59), Expect = 9.6
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 279 TIAVVPLSSSSNEINQLYKRKLPSNGGALYPRATETRD 392
T A +PL S N + + + NGGA+ P+A++ RD
Sbjct: 61 TAANIPLHKSDNALLRTFLNTRVVNGGAI-PKASQLRD 97
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,099,942
Number of Sequences: 59808
Number of extensions: 444398
Number of successful extensions: 1270
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1266
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2107953584
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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