Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0143
         (773 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132877-15|CAC70111.1|  628|Caenorhabditis elegans Hypothetical...    78   8e-15
Z81095-3|CAB03159.2|  494|Caenorhabditis elegans Hypothetical pr...    31   1.2  
Z81462-3|CAB03842.2| 1034|Caenorhabditis elegans Hypothetical pr...    29   2.8  
AF067219-15|AAC17023.2|  802|Caenorhabditis elegans Hypothetical...    29   3.7  
Z66498-3|CAA91293.2|  687|Caenorhabditis elegans Hypothetical pr...    28   8.5  

>AL132877-15|CAC70111.1|  628|Caenorhabditis elegans Hypothetical
           protein Y105E8B.9 protein.
          Length = 628

 Score = 77.8 bits (183), Expect = 8e-15
 Identities = 41/105 (39%), Positives = 60/105 (57%), Gaps = 1/105 (0%)
 Frame = +3

Query: 363 LYPRATETRDLRTLXGIWSFRPSPADP-EFGYRNGWYAQDLEKTGSVIHMPVPSSYNDVG 539
           L+ +  E R + +L G+W+F   P +  + G  N W   DLE+  +   MPVPS+YND+G
Sbjct: 23  LHVQKNEIRTVDSLDGLWTFVREPHNGGDVGIVNQWNTLDLERFQNATVMPVPSAYNDLG 82

Query: 540 EDASLRDHVSLVWYDRXFHVPPWWQTAKQRVWLRFSSVHYAAEVF 674
             + LRDH+  VWY++   VP   +    R  LRF SV+Y A V+
Sbjct: 83  TGSELRDHIGWVWYEKKEFVP--LRDRNMRHVLRFGSVNYFAVVY 125


>Z81095-3|CAB03159.2|  494|Caenorhabditis elegans Hypothetical
           protein F59F4.3 protein.
          Length = 494

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/44 (29%), Positives = 26/44 (59%)
 Frame = +3

Query: 237 RFAFALLLICIVSVTIAVVPLSSSSNEINQLYKRKLPSNGGALY 368
           RF F  +L+ +VS T+  +P++   N+++  + R +P+   A Y
Sbjct: 447 RFVFWAMLLGVVSTTVMFIPMTYVMNDLDLSWCRLMPNTTFAKY 490


>Z81462-3|CAB03842.2| 1034|Caenorhabditis elegans Hypothetical
           protein C04H5.3 protein.
          Length = 1034

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +3

Query: 300 SSSSNEINQLYKRKLPSNGGALYPRATETRDLRTLXGIWSFRPSPADPEFGYRN 461
           +S+ + ++  Y  +L  N   + P  + TRDL T+    ++  + A PEF Y N
Sbjct: 203 ASAQDLVDNGYMNELRDNARVILPIFSSTRDLSTVFRNATWLANMASPEFIYIN 256


>AF067219-15|AAC17023.2|  802|Caenorhabditis elegans Hypothetical
           protein R12E2.2 protein.
          Length = 802

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 6/76 (7%)
 Frame = +3

Query: 321 NQLYKRKLPSNGGALYPRATETRDLRTLXGIWSFRPSPADPEFGYRNG------WYAQDL 482
           N L K         + P  T+ RDL+T  G+W+ R   ++ E   R         + +D+
Sbjct: 364 NDLVKPPNNLKTSTIKPAVTDKRDLKTEIGLWAERSRHSNFEQSRRRNLATIQRLHPKDV 423

Query: 483 EKTGSVIHMPVPSSYN 530
           +K  +   +P P + N
Sbjct: 424 QKISTAPDVPTPKAEN 439


>Z66498-3|CAA91293.2|  687|Caenorhabditis elegans Hypothetical
           protein M195.3 protein.
          Length = 687

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -3

Query: 642 ISARPVVSPSATTAERGTSCRTTPSLH 562
           I A    SPS++T+ R  S R++PS+H
Sbjct: 607 IEASVEKSPSSSTSRRSISIRSSPSIH 633


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,133,415
Number of Sequences: 27780
Number of extensions: 330987
Number of successful extensions: 781
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)